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    13 repositories

    • generalModel

      Public
      Scripts of the general implementation of the maximum likelihood method to estimate haplotype frequencies and MOI from molecular data.
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • Non-parametric-MOI-estimation

      Public
      Maximum-likelihood to estimate the distribution of MOI wihtout parametric assumtions
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 26, 2025Dec 26, 2025

    • MultiLociBiallelicModel

      Public
      This repository contains the scripts of the model described in the manuscript 'A maximum-likelihood method to estimate haplotype frequencies and prevalence alon…
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • MultiAllelicBiLociModel

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • MOI---Incomplete-Data-Model

      Public
      R script and documentation of maximum-likelihood estimation for MOI and lineage frequency estimates accounting for incomplete data
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • STRModel

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • MOI-Bias-correction

      Public
      Repository of R functions used to derive results for the paper: "Bias-corrected maximum-likelihood estimation of multiplicity of infection and lineage frequenci…
      R
      •0•0•0•0•Updated Nov 27, 2023Nov 27, 2023

    • Maximum-likelihood-estimate-MOI-and-lineage-frequency-distribution

      Public
      Updated R code for https://doi.org/10.1371/journal.pone.0194148 "Large and finite sample properties of a maximum-likelihood estimator for multiplicity of infect…
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

    • Ebola

      Public
      Predicting the combined effects of case isolation, safe funeral practices, and contact tracing during Ebola virus disease outbreaks
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 24, 2022Dec 24, 2022

    • MultipleExposuresCOVID19

      Public
      Code for
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • COVID19_Spatial_Model

      Public
      This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-depend…
      Julia
      •
      MIT License
      •2•4•0•0•Updated Oct 20, 2022Oct 20, 2022

    • COVID19_ADE_Model

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2021Apr 1, 2021

    • COVID19_LTCFs

      Public
      Model used for the simulations in the paper ``Preventing COVID-19 spread in closed facilities by regular testing of employees – an efficient intervention in lon…
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021
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