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COVID19_Spatial_Model
COVID19_Spatial_Model PublicThis repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive m…
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COVID19_LTCFs
COVID19_LTCFs PublicModel used for the simulations in the paper ``Preventing COVID-19 spread in closed facilities by regular testing of employees – an efficient intervention in long-term care facilities and prisons?´´…
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MOI-Bias-correction
MOI-Bias-correction PublicRepository of R functions used to derive results for the paper: "Bias-corrected maximum-likelihood estimation of multiplicity of infection and lineage frequencies".
R
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MultiLociBiallelicModel
MultiLociBiallelicModel PublicThis repository contains the scripts of the model described in the manuscript 'A maximum-likelihood method to estimate haplotype frequencies and prevalence alongside multiplicity of infection from …
R
Repositories
- generalModel Public
Scripts of the general implementation of the maximum likelihood method to estimate haplotype frequencies and MOI from molecular data.
Maths-against-Malaria/generalModel’s past year of commit activity - Non-parametric-MOI-estimation Public
Maximum-likelihood to estimate the distribution of MOI wihtout parametric assumtions
Maths-against-Malaria/Non-parametric-MOI-estimation’s past year of commit activity - MultiLociBiallelicModel Public
This repository contains the scripts of the model described in the manuscript 'A maximum-likelihood method to estimate haplotype frequencies and prevalence alongside multiplicity of infection from SNP data'.
Maths-against-Malaria/MultiLociBiallelicModel’s past year of commit activity - MultiAllelicBiLociModel Public
Maths-against-Malaria/MultiAllelicBiLociModel’s past year of commit activity - MOI---Incomplete-Data-Model Public
R script and documentation of maximum-likelihood estimation for MOI and lineage frequency estimates accounting for incomplete data
Maths-against-Malaria/MOI---Incomplete-Data-Model’s past year of commit activity - STRModel Public
Maths-against-Malaria/STRModel’s past year of commit activity - MOI-Bias-correction Public
Repository of R functions used to derive results for the paper: "Bias-corrected maximum-likelihood estimation of multiplicity of infection and lineage frequencies".
Maths-against-Malaria/MOI-Bias-correction’s past year of commit activity - Maximum-likelihood-estimate-MOI-and-lineage-frequency-distribution Public
Updated R code for https://doi.org/10.1371/journal.pone.0194148 "Large and finite sample properties of a maximum-likelihood estimator for multiplicity of infection"
Maths-against-Malaria/Maximum-likelihood-estimate-MOI-and-lineage-frequency-distribution’s past year of commit activity - Ebola Public
Predicting the combined effects of case isolation, safe funeral practices, and contact tracing during Ebola virus disease outbreaks
Maths-against-Malaria/Ebola’s past year of commit activity
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