MOI---Incomplete-Data-Model

R script and documentation of maximum-likelihood estimation for MOI and lineage frequency estimates accounting for incomplete data The code is for the method described in: Hashemi M, Schneider KA (2024) Estimating multiplicity of infection, allele frequencies, and prevalences accounting for incomplete data. PLOS ONE 19(3): e0287161. https://doi.org/10.1371/journal.pone.0287161