Repositories list

• dmagna-dma-paper

  Public
  DMA of D. magna - data analysis code for paper

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• lcmsPlot

  Public
  lcmsPlot: An R Bioconductor package for plotting and interacting with LC-MS data, featuring chromatograms, mass spectra, and more.

  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•77 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• MetMashR

  Public
  A Bioconductor R package that can be used to import, clean, filter, prioritise, combine and otherwise "mash" together metabolite annotations from multiple sourc…

  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• structToolbox

  Public
  R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox: An extensive set of data (pre-)processing and analysis methods and tools for me…

  machine-learningstatisticsmetabolomics+ 6

  machine-learningstatisticsmetabolomicsr-packagelc-msmultivariate-analysisbioconductor-packagedimsunivariate

  R

  •

  GNU General Public License v3.0

  •44 forks•1111 stars•1111 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• struct

  Public
  R/Bioconductor package - STRUCT: STatistics in R Using Class Templates

  machine-learningstatisticsmetabolomics+ 6

  machine-learningstatisticsmetabolomicsr-packagelc-msmultivariate-analysisbioconductor-packagedimsunivariate

  R

  •

  GNU General Public License v3.0

  •00 forks•66 stars•55 issues•00 pull requests•Updated Apr 13, 2026Apr 13, 2026

• msPurity

  Public
  A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics

  metabolomicsmass-spectrometrylc-ms+ 5

  metabolomicsmass-spectrometrylc-msfragmentationbioconductor-packagedimslc-msmsprecursor-ion-purity

  HTML

  •

  GNU General Public License v3.0

  •44 forks•1616 stars•1010 issues•00 pull requests•Updated Mar 12, 2026Mar 12, 2026

• django-mogi

  Public
  Metabolomics Organisation with Galaxy and ISA

  Python

  •

  GNU General Public License v3.0

  •00 forks•33 stars•00 issues•1111 pull requests•Updated Feb 20, 2026Feb 20, 2026

• dmadb-docs

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• mzCorrectR

  Public
  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• django-galaxy

  Public
  Galaxy interfacing with Django

  Python

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• django-gfiles

  Public
  Simple file management in Django

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• pyeds

  Public
  Provides easy access to Thermo Discoverer platform results

  Python

  •

  Other

  •55 forks•00 stars•00 issues•00 pull requests•Updated Feb 13, 2026Feb 13, 2026

• dmagna-dma-galaxy-workflows

  Public
  DMA of D. magna - Galaxy workflows

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• pmp

  Public
  R/Bioconductor package - Peak Matrix Processing and signal batch correction for metabolomics data sets

  statisticsmetabolomicsmass-spectrometry+ 8

  statisticsmetabolomicsmass-spectrometryscalingr-packagelc-msdata-processingnormalisationbioconductor-packagedims+ 1

  R

  •

  GNU General Public License v3.0

  •11 fork•22 stars•11 issue•00 pull requests•Updated Nov 11, 2025Nov 11, 2025

• mogi-docs

  Public archive
  ⚠️ 🚫 [DEPRECATED] see README for more details.

  HTML

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Sep 19, 2025Sep 19, 2025

• cameraDIMS

  Public archive
  ⚠️ 🚫 [DEPRECATED] - Modification of R CAMERA package to work with DIMS peaklist

  R

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• lcfrac-galaxy

  Public
  Galaxy tool to combine the spectra and annotation from an LC-MS(/MS) fractionation experiment

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 8, 2025Aug 8, 2025

• msnpy-galaxy

  Public
  Galaxy tools for Python package MSnPy: data-processing and annotating MSn-based metabolomics and lipidomics data"

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• dmatools-galaxy

  Public
  General Galaxy tools developed for the DMA project

  HTML

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 31, 2025Jul 31, 2025

• Metabonaut

  Public
  TeX

  •77 forks•00 stars•00 issues•00 pull requests•Updated Jul 16, 2025Jul 16, 2025

• conda-computational-metabolomics

  Public
  A collection of conda recipes and build workfow for the conda computational-metabolomics channel.

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 8, 2025May 8, 2025

• mspurity-galaxy

  Public
  Galaxy tools for msPurity package: includes precursor ion purity calculations and spectral matching

  galaxymetabolomicsmass-spectrometry+ 4

  galaxymetabolomicsmass-spectrometrylc-msfragmentationdimsprecursor-ion-purity

  R

  •

  GNU General Public License v3.0

  •66 forks•33 stars•77 issues•00 pull requests•Updated Sep 13, 2024Sep 13, 2024

• sirius-csifingerid-galaxy

  Public
  Python

  •

  GNU General Public License v3.0

  •44 forks•33 stars•00 issues•11 pull request•Updated Jul 31, 2024Jul 31, 2024

• metabolomicsWorkbenchR

  Public
  R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API

  metabolomicsr-packagelc-ms+ 3

  metabolomicsr-packagelc-msnmr-spectroscopybioconductor-packagemetabolomics-data

  R

  •11 fork•99 stars•11 issue•00 pull requests•Updated Jul 3, 2024Jul 3, 2024

• django-mbrowse

  Public archive
  ⚠️ 🚫 [DEPRECATED] see README for more details.

  Python

  •

  GNU General Public License v3.0

  •00 forks•33 stars•55 issues•00 pull requests•Updated May 9, 2024May 9, 2024

• django-misa

  Public archive
  ⚠️ 🚫 [DEPRECATED] see README for more details.

  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 9, 2024May 9, 2024

• django-mogisite

  Public archive
  ⚠️ 🚫 [DEPRECATED] see README for more details.

  CSS

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 9, 2024May 9, 2024

• ptox-metadata-manager

  Public
  The PrecisionTox Metadata Manager API

  Python

  •

  GNU Affero General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 18, 2023Dec 18, 2023

• cfm-galaxy

  Public
  Galaxy tool for applying Competitive Fragmentation Modeling (CFM)

  Python

  •

  GNU General Public License v3.0

  •22 forks•22 stars•77 issues•00 pull requests•Updated Nov 15, 2023Nov 15, 2023

• staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.9k5.9k forks•00 stars•00 issues•00 pull requests•Updated Aug 3, 2023Aug 3, 2023