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@seattleflu Seattle Flu Study

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    24 repositories

    • forecasts-ncov-states

      Public
      SARS-CoV-2 variant growth rates and frequency forecasts for US states
      Python
      •3•0•0•2•Updated Feb 27, 2025Feb 27, 2025

    • id3c-customizations

      Public
      Extensions of ID3C for the Seattle Flu Study
      id3cseattle-flu-studyscan-study
      id3cseattle-flu-studyscan-study
      PLpgSQL
      •
      MIT License
      •0•3•3•2•Updated Feb 4, 2025Feb 4, 2025

    • assembly

      Public
      Pipelines for assembling NGS data from Seattle flu study.
      Python
      •9•8•0•0•Updated Jul 12, 2024Jul 12, 2024

    • slack-exporter

      Public
      A Slack bot for exporting content from public and private channels.
      Python
      •
      GNU General Public License v3.0
      •48•0•0•0•Updated Apr 2, 2024Apr 2, 2024

    • id3c

      Public
      Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
      pythonclipostgres
      pythonclipostgressqletlrest-apipostgresqlfhirplpgsqlsqitch
      PLpgSQL
      •
      MIT License
      •5•22•0•11•Updated Dec 6, 2023Dec 6, 2023

    • switchboard

      Public archive
      A REDCap record switchboard for the SFS kit unboxing team.
      sqlitemakedatasette
      sqlitemakedatasettescan-study
      Python
      •
      MIT License
      •0•2•0•2•Updated Nov 27, 2023Nov 27, 2023

    • documentation

      Public
      Internal platform documentation
      wikiid3cseattle-flu-study
      wikiid3cseattle-flu-studyscan-study
      Python
      •1•1•0•0•Updated Jul 21, 2023Jul 21, 2023

    • incidence-mapper

      Public
      R interface to database, map model training, and model data API Server
      HTML
      •
      MIT License
      •1•4•46•2•Updated Dec 26, 2022Dec 26, 2022

    • infra

      Public
      Work-in-progress Ansible setup for Seattle Flu Study infrastructure.
      Shell
      •0•0•0•3•Updated Nov 18, 2022Nov 18, 2022

    • husky-musher

      Public
      A redirecting service for the Husky Coronavirus Testing study
      Python
      •2•2•0•1•Updated Sep 15, 2022Sep 15, 2022

    • lab-result-reports

      Public archive
      Tools for generating lab test result reports as PDFs
      dockerlatexseattle-flu-study
      dockerlatexseattle-flu-studyscan-study
      TeX
      •
      MIT License
      •1•2•0•0•Updated Aug 10, 2022Aug 10, 2022

    • geocoding

      Public
      Geocoding addresses into census tracts
      Python
      •0•0•0•0•Updated Aug 4, 2022Aug 4, 2022

    • augur-build

      Public
      the (in development) augur build for understanding influenza dynamics in Seattle
      Python
      •31•0•3•0•Updated Jul 9, 2021Jul 9, 2021

    • hct-autumn-2020

      Public
      University-wide COVID-19 Testing Program Methods and Autumn 2020 Results
      0•0•0•0•Updated Jan 28, 2021Jan 28, 2021

    • heatmap

      Public
      Simple heatmap display of sample locations
      Python
      •0•0•0•0•Updated Oct 3, 2020Oct 3, 2020

    • website-y3

      Public archive
      A simple, static website for SFS Year 3
      HTML
      •0•0•0•0•Updated Sep 23, 2020Sep 23, 2020

    • Lab-Labels

      Public
      Quickly generate PDFs for printing cryo-safe labels
      TeX
      •
      Other
      •1•0•0•0•Updated Sep 2, 2020Sep 2, 2020

    • genomic-incidence-tracker

      Public archive
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•0•7•3•Updated Aug 20, 2020Aug 20, 2020

    • sqlite-utils

      Public
      Python CLI utility and library for manipulating SQLite databases
      Python
      •
      Apache License 2.0
      •135•0•0•0•Updated Jul 8, 2020Jul 8, 2020

    • covid19-early-detection

      Public
      0•1•0•0•Updated May 27, 2020May 27, 2020

    • lisless

      Public
      A LIS that does less, for the LIS-less.
      Python
      •2•1•0•0•Updated Feb 27, 2020Feb 27, 2020

    • seattle-geojson

      Public
      A collection of Seattle maps based on different administrative divisions
      R
      •5•4•4•0•Updated Dec 7, 2019Dec 7, 2019

    • simulated-data

      Public
      Simulated Seattle Flu Study data for developing visualization, analysis, and modeling tools.
      R
      •0•0•1•0•Updated May 13, 2019May 13, 2019

    • seattle-flu-js-prototype

      Public
      This repo contains prototypes and visualization sketches for the Web-based Seattle Flu platform
      JavaScript
      •0•0•0•0•Updated Mar 17, 2019Mar 17, 2019
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