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    • beagle

      Public
      Voyager Backend
      Python
      Apache License 2.0
      629919Updated Apr 23, 2026Apr 23, 2026
    • smile-dashboard

      Public
      TypeScript
      GNU Affero General Public License v3.0
      10003Updated Apr 23, 2026Apr 23, 2026
    • Pipeline for computing neoantigen qualities from DNA and RNA-Seq data
      Python
      MIT License
      16132Updated Apr 23, 2026Apr 23, 2026
    • LimsRest

      Public
      the restful service used by the IGO LIMS
      Java
      2254Updated Apr 22, 2026Apr 22, 2026
    • Sample Submission API written in node.js
      JavaScript
      20131Updated Apr 22, 2026Apr 22, 2026
    • Sapio LIMS customizations to workflows for IGO
      Java
      0219Updated Apr 21, 2026Apr 21, 2026
    • ridgeback

      Public
      Toil API
      Python
      Apache License 2.0
      21385Updated Apr 21, 2026Apr 21, 2026
    • igo-genomics

      Public
      Vue
      0130Updated Apr 20, 2026Apr 20, 2026
    • igo-delivery

      Public
      Delivery email, symlinks and permissions for IGO projects
      Python
      Apache License 2.0
      0001Updated Apr 16, 2026Apr 16, 2026
    • phylowgs

      Public
      Application for inferring subclonal composition and evolution from whole-genome sequencing data.
      Python
      GNU General Public License v3.0
      56000Updated Apr 16, 2026Apr 16, 2026
    • Sample QC with nodejs backend
      JavaScript
      0000Updated Apr 15, 2026Apr 15, 2026
    • JavaScript
      0002Updated Apr 13, 2026Apr 13, 2026
    • IrisAI

      Public
      Multi-agent AI assistant for HPC workflows using Model Context Protocol (MCP) and Chainlit.
      Python
      Other
      0000Updated Apr 11, 2026Apr 11, 2026
    • Java
      42920Updated Apr 3, 2026Apr 3, 2026
    • JavaScript
      1006Updated Apr 1, 2026Apr 1, 2026
    • CMO MetaDB Request Filter app
      Java
      GNU Affero General Public License v3.0
      4000Updated Mar 27, 2026Mar 27, 2026
    • Python
      1000Updated Mar 20, 2026Mar 20, 2026
    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      Other
      223418941Updated Mar 13, 2026Mar 13, 2026
    • tempo

      Public
      CCS research pipeline to process WES and WGS TN pairs
      Groovy
      075212Updated Mar 4, 2026Mar 4, 2026
    • Beagle API Command Line Utility
      Python
      1183Updated Feb 26, 2026Feb 26, 2026
    • Load, review and adjust facets fits
      R
      32140Updated Feb 18, 2026Feb 18, 2026
    • SMILE messaging service for handling CMO label generation
      Java
      GNU Affero General Public License v3.0
      4000Updated Feb 17, 2026Feb 17, 2026
    • facets

      Public
      Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
      R
      701591284Updated Feb 12, 2026Feb 12, 2026
    • Albany

      Public
      Mission Albany
      Python
      1000Updated Feb 10, 2026Feb 10, 2026
    • Python
      1100Updated Jan 26, 2026Jan 26, 2026
    • Spring Boot LIMS SampleMetadata publisher framework
      Java
      GNU Affero General Public License v3.0
      4000Updated Jan 9, 2026Jan 9, 2026
    • Centralized configurations for checkstyle plugin and dependency management.
      Java
      GNU Affero General Public License v3.0
      4100Updated Jan 8, 2026Jan 8, 2026
    • swabnseq

      Public
      Python
      0000Updated Dec 30, 2025Dec 30, 2025
    • critfhirdeveloper

      Public template
      CRIT FHIR Developer Documentation
      HTML
      Apache License 2.0
      21k001Updated Dec 18, 2025Dec 18, 2025
    • cfDNA Sequencing Pipeline with UMI
      Python
      MIT License
      3113814Updated Dec 8, 2025Dec 8, 2025
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