Repositories list

• colomoto-docker

  Public
  The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

  dockersystems-biologyjupyter-notebook+ 2

  dockersystems-biologyjupyter-notebookmodel-analysisbiological-networks

  Jupyter Notebook

  •1616 forks•2727 stars•55 issues•22 pull requests•Updated Apr 29, 2026Apr 29, 2026

• bioLQM

  Public
  toolkit for the manipulation and analysis of Logical Qualitative Models of biological regulatory networks

  Java

  •

  GNU Lesser General Public License v3.0

  •1515 forks•2020 stars•99 issues•22 pull requests•Updated Apr 22, 2026Apr 22, 2026

• pyMaBoSS

  Public
  python interface for the MaBoSS software

  Jupyter Notebook

  •77 forks•99 stars•00 issues•11 pull request•Updated Apr 16, 2026Apr 16, 2026

• colomoto-conda

  Public
  Conda recipes for CoLoMoTo related tools

  Shell

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 22, 2026Feb 22, 2026

• colomoto-docker-py

  Public
  Helper script for launching the CoLoMoTo Docker distribution

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 7, 2026Feb 7, 2026

• colomoto-jupyter

  Public
  CoLoMoTo helper modules and functions

  Python

  •33 forks•44 stars•55 issues•00 pull requests•Updated Feb 7, 2026Feb 7, 2026

• colomoto-tutorial-sizek

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 5, 2025Sep 5, 2025

• colomoto.github.io

  Public
  The colomoto website

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 4, 2025May 4, 2025

• colomoto-web

  Public
  static generated web site for CoLoMoTo

  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated May 31, 2024May 31, 2024

• ERODE-CoLoMoTo

  Public
  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 7, 2023Jun 7, 2023

• mddlib

  Public
  Simple toolkit for the manipulation of Multi-valued Decision Diagrams

  Java

  •

  GNU Lesser General Public License v3.0

  •11 fork•44 stars•00 issues•00 pull requests•Updated Jun 30, 2022Jun 30, 2022

• Biosimulators_mpbn

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 12, 2022Jan 12, 2022

• bns-python

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 30, 2020Nov 30, 2020

• boolSim-python

  Public
  Python interface to boolSim

  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 30, 2020Jul 30, 2020

• espresso-logic-minimizer

  Public
  A modernized version of the Espresso heuristic logic minimizer original C code

  C

  •

  MIT License

  •1111 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2020May 5, 2020

• colomoto-maven-repository

  Public
  maven repository

  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2020Apr 28, 2020

• colomoto-docker-base

  Public archive
  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2020Apr 23, 2020

• colomoto-benchmarks

  Public
  Python

  •00 forks•11 star•11 issue•00 pull requests•Updated Apr 14, 2017Apr 14, 2017

• gh-documentation

  Public
  Generate and host some javadoc

  Shell

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 17, 2012Jul 17, 2012