Skip to content

@cevo-public cEvo Public Resources

Change the repository type filter

All

    Repositories list

    12 repositories

    • ReVSeq-project

      Public
      phylogenetic trees for the 2023/24 season in Switzerland
      0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • marburg-virus

      Public
      Nextstrain build of the Orthomarburgvirus marburgense species taxon
      Python
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • Quantification-of-the-spread-of-a-SARS-CoV-2-variant

      Public
      covid-19
      covid-19
      Python
      •
      GNU General Public License v3.0
      •0•10•0•0•Updated May 28, 2023May 28, 2023

    • harvester-database-and-automation

      Public
      The database and automation infrastructure used in the Swiss SARS-CoV-2 Sequencing Consortium (S3C)
      automationresearchgenomics
      automationresearchgenomicsdata-managementsars-cov-2
      Java
      •
      GNU Lesser General Public License v3.0
      •0•0•0•0•Updated May 16, 2023May 16, 2023

    • Grapevine-SARS-CoV-2-Introduction-Analysis

      Public
      Pipeline for estimating putatively independent introductions of SARS-CoV-2 from genome sequences.
      R
      •0•0•0•0•Updated Oct 27, 2022Oct 27, 2022

    • POUMM-GWAS

      Public
      Scripts for "A phylogeny-aware GWAS framework to correct for heritable pathogen effects on infectious disease traits".
      TeX
      •1•2•0•0•Updated Jul 21, 2022Jul 21, 2022

    • 2018-StadlerEtAl-LineageTrees-CodeData

      Public
      0•0•0•0•Updated Jul 14, 2020Jul 14, 2020

    • TreePrior-ClockRate

      Public
      Scripts and data for "The impact of the tree prior on estimating clock rates during epidemic outbreaks" (PNAS 2018)
      R
      •3•2•0•0•Updated Mar 18, 2018Mar 18, 2018

    • 2015-GEMP-Phylodynamics

      Public
      Inferring epidemiological parameters from phylogenies with BEAST2
      1•0•0•0•Updated Sep 3, 2015Sep 3, 2015

    • Ebola-CurrentsOutbreaks2014

      Public
      Additional files for our paper "Insights into the early epidemic spread of Ebola in Sierra Leone provided by viral sequence data" submitted to PLOS Currents Out…
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2015Mar 26, 2015

    • 2015-CeskyKrumlov-Phylodynamics

      Public
      Český Krumlov 2015 - Phylodynamics
      R
      •2•2•0•0•Updated Feb 5, 2015Feb 5, 2015

    • TreePar-MatlabPlugin

      Public
      Matlab plugin for TreePar to calculate likelihood for age dependent extinction rates
      M
      •
      GNU General Public License v2.0
      •0•1•0•0•Updated Nov 9, 2014Nov 9, 2014
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.