Repositories list

• create-bridgedb-genedb-config

  Public
  Shell

  •

  MIT License

  •22 forks•11 star•22 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• create-bridgedb-genedb

  Public
  Example of script to query BioMart, parse and create a BridgeDb database

  geneensemblidentifier-mapping

  geneensemblidentifier-mapping

  Java

  •

  Apache License 2.0

  •44 forks•44 stars•66 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• docker

  Public
  BridgeDb Docker

  dockerdocker-imageidentifiers+ 2

  dockerdocker-imageidentifiersbridgedbbridgedb-docker

  Shell

  •44 forks•55 stars•1111 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• BridgeDb

  Public
  The BridgeDb Library source code

  javabioinformaticsdatabase+ 5

  javabioinformaticsdatabaseurimysql-backendhacktoberfestbridgedbidentifier-mapping

  Java

  •

  Apache License 2.0

  •2222 forks•3636 stars•3232 issues•55 pull requests•Updated Mar 21, 2026Mar 21, 2026

• datasources

  Public
  Repository with the BridgeDb data source.

  registrylife-sciencesbridgedb

  registrylife-sciencesbridgedb

  Python

  •

  Creative Commons Zero v1.0 Universal

  •77 forks•44 stars•44 issues•00 pull requests•Updated Mar 14, 2026Mar 14, 2026

• tiwid

  Public
  This is where identifiers die

  hacktoberfestbridgedb

  hacktoberfestbridgedb

  Python

  •

  Creative Commons Zero v1.0 Universal

  •44 forks•44 stars•66 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• bridgedb.github.io

  Public
  Website of the BridgeDb project

  elixiridentifier

  elixiridentifier

  HTML

  •44 forks•00 stars•88 issues•00 pull requests•Updated Feb 2, 2026Feb 2, 2026

• data

  Public
  Repository to mimic the old data/gene_database/ API

  Groovy

  •33 forks•33 stars•44 issues•00 pull requests•Updated Jan 3, 2026Jan 3, 2026

• create-bridgedb-metabolites

  Public
  Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

  metabolomicsidentifiers

  metabolomicsidentifiers

  Groovy

  •

  Other

  •77 forks•44 stars•1313 issues•00 pull requests•Updated Jan 3, 2026Jan 3, 2026

• BridgeDbWebservice

  Public
  BridgeDb Webservice

  Java

  •

  Apache License 2.0

  •33 forks•22 stars•1818 issues•00 pull requests•Updated Nov 9, 2025Nov 9, 2025

• BridgeDbR

  Public
  Bioconductor R package for BridgeDb

  proteinsgenesidentifiers+ 4

  proteinsgenesidentifierslife-sciencesbioconductor-packagebridgedbmetabolites

  R

  •88 forks•44 stars•1313 issues•00 pull requests•Updated Nov 9, 2025Nov 9, 2025

• BridgeDbConfig

  Public
  Java

  •

  Apache License 2.0

  •11 fork•11 star•22 issues•11 pull request•Updated Dec 6, 2023Dec 6, 2023

• BridgeDb-Examples

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2023Dec 2, 2023

• Wikidata2Bridgedb

  Public
  Creation of BridgeDb mapping databases from Wikidata

  wikidatabridgedbcovid-19

  wikidatabridgedbcovid-19

  Java

  •

  Apache License 2.0

  •22 forks•00 stars•33 issues•11 pull request•Updated Nov 20, 2023Nov 20, 2023

• swagger

  Public
  Swagger file for bridgedbwebservice

  HTML

  •33 forks•00 stars•66 issues•00 pull requests•Updated Sep 29, 2023Sep 29, 2023

• nwo-hackathon-2023

  Public
  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 10, 2023Feb 10, 2023

• create-nanomaterial-mappings

  Public
  Groovy

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 9, 2023Feb 9, 2023

• bridgedbjs

  Public
  JS client for BridgeDb.org ID mapping framework webservices

  JavaScript

  •

  Apache License 2.0

  •11 fork•44 stars•88 issues•2525 pull requests•Updated Jan 7, 2023Jan 7, 2023

• bridgedb-webservice

  Public archive
  BridgeDb Webservice

  Java

  •

  Apache License 2.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Dec 12, 2022Dec 12, 2022

• create-bridgedb-secondary2primary

  Public
  Java

  •

  Apache License 2.0

  •44 forks•00 stars•00 issues•00 pull requests•Updated Jul 30, 2022Jul 30, 2022

• webservice.bridgerest

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2022May 4, 2022

• webservice.biomart

  Public
  Biomart webservice plugin from org.bridgedb.webservice.biomart

  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2022May 4, 2022

• InteractionDB

  Public
  A BridgeDb Derby database to map interactions from different databases to each other. This database can be used to annotate interactions in PathVisio and Wikipa…

  Java

  •22 forks•22 stars•22 issues•11 pull request•Updated Apr 1, 2022Apr 1, 2022

• BridgeDb-matlab

  Public
  Functions to use the BridgeDb webservice in Matlab. BridgeDb is a tool for identifier mapping.

  matlabbridgedbidentifier-mapping

  matlabbridgedbidentifier-mapping

  Python

  •

  Other

  •33 forks•11 star•11 issue•00 pull requests•Updated Apr 1, 2022Apr 1, 2022

• stories

  Public
  BridgeDb Stories explain the various uses cases

  44 forks•00 stars•00 issues•11 pull request•Updated Mar 31, 2022Mar 31, 2022

• configManagement

  Public
  Config management for BridgeDb

  Perl

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 16, 2021Feb 16, 2021

• vocabularies

  Public
  Source files for the BridgeDb ontology

  HTML

  •22 forks•00 stars•77 issues•00 pull requests•Updated Sep 18, 2020Sep 18, 2020

• bridgedb.cytoscape

  Public
  BridgeDb App for Cytoscape 3

  Java

  •77 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2020Sep 10, 2020

• Validator

  Public
  VoID Validator

  Java

  •

  Apache License 2.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Nov 21, 2019Nov 21, 2019

• IdentityMappingService

  Public
  The Identity Mapping Service to combine BridgeDb and the Validator

  Java

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 21, 2019Nov 21, 2019