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@PMCC-BioinformaticsCore PMCC - Bioinformatics Core

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    24 repositories

    • mihcro

      Public
      PMCC microscopy image processing
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Mar 11, 2026Mar 11, 2026

    • janis-core

      Public
      Core python modules for Janis Pipeline workflow assistant
      Common Workflow Language
      •
      GNU General Public License v3.0
      •10•5•18•10•Updated Jan 13, 2026Jan 13, 2026

    • macpie

      Public
      R package for High-Throughput Transcriptomics
      R
      •
      Other
      •0•1•0•3•Updated Nov 24, 2025Nov 24, 2025

    • nextflow-intro-workshop

      Public
      Introduction to Nextflow and Running nf-core Workflows Workshop
      CSS
      •
      MIT License
      •0•0•0•0•Updated Aug 15, 2025Aug 15, 2025

    • dinoflow

      Public
      Nextflow workflow for MAC-seq
      Groovy
      •
      MIT License
      •2•0•0•0•Updated Jul 23, 2025Jul 23, 2025

    • nextflow-nf-core-workshop-2025_v2

      Public
      Nextflow and nf-core workshop 2025
      HTML
      •
      MIT License
      •2•1•0•0•Updated May 28, 2025May 28, 2025

    • nextflow-nf-core-workshop-2025

      Public
      Nextflow and nf-core workshop 2025
      MIT License
      •2•0•0•1•Updated Apr 17, 2025Apr 17, 2025

    • AI_Beyond_Omics_Workshop

      Public
      This workshop is scheduled to take place at the The annual Australian Bioinformatics and Computational Biology Society (ABACBS) conference 2024 at University of…
      SCSS
      •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • janis

      Public
      [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
      pythonworkflowwdl
      pythonworkflowwdlcommon-workflow-languagecwlworkflow-description-language
      Python
      •
      GNU General Public License v3.0
      •12•44•13•2•Updated Sep 17, 2023Sep 17, 2023

    • janis-pipelines

      Public
      Example pipelines with Janis
      Common Workflow Language
      •
      GNU General Public License v3.0
      •6•2•0•0•Updated Aug 30, 2023Aug 30, 2023

    • janis-translate-examples

      Public
      Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Aug 24, 2023Aug 24, 2023

    • janis-assistant

      Public
      A language and engine agnostic workflow runner for Janis
      Python
      •
      GNU General Public License v3.0
      •2•2•4•1•Updated Jul 12, 2023Jul 12, 2023

    • python-wdlgen

      Public
      Python classes to loosely generate WDL
      Python
      •
      GNU General Public License v3.0
      •2•3•1•1•Updated Jul 12, 2023Jul 12, 2023

    • janis-bioinformatics

      Public
      Repository of bioinformatics tools for the pipelines module
      Python
      •
      GNU General Public License v3.0
      •10•2•4•0•Updated Jul 12, 2023Jul 12, 2023

    • janis-unix

      Public
      Unix tools and data types for Janis
      Python
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Jun 13, 2023Jun 13, 2023

    • janis-germlineVC

      Public
      Janis Germline Variant Calling Pipeline
      Other
      •0•0•0•0•Updated Mar 21, 2023Mar 21, 2023

    • scripts

      Public
      Collection of Peter Mac Scripts
      Python
      •
      GNU General Public License v3.0
      •2•2•0•0•Updated Apr 13, 2022Apr 13, 2022

    • janis-templates

      Public
      Configurations for Janis to run at specific organisations
      Python
      •1•0•0•1•Updated Aug 18, 2021Aug 18, 2021

    • janis-training

      Public
      Janis Online Training Materials
      Python
      •1•1•0•0•Updated May 23, 2021May 23, 2021

    • janis-workshops

      Public
      Workshops for the Janis pipeline framework
      Python
      •
      GNU General Public License v3.0
      •4•3•0•0•Updated May 14, 2021May 14, 2021

    • janis-patterns

      Public
      A repository of common Janis patterns
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 2, 2021Feb 2, 2021

    • CONTRA

      Public
      Python
      •
      GNU General Public License v2.0
      •1•3•0•1•Updated Jan 3, 2020Jan 3, 2020

    • CWLab

      Public
      An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface
      JavaScript
      •
      Apache License 2.0
      •9•0•0•0•Updated Nov 14, 2019Nov 14, 2019

    • seqliner

      Public
      0•0•0•0•Updated Feb 22, 2016Feb 22, 2016
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