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    • mihcro

      Public
      PMCC microscopy image processing
      Nextflow
      MIT License
      0100Updated Mar 11, 2026Mar 11, 2026
    • Core python modules for Janis Pipeline workflow assistant
      Common Workflow Language
      GNU General Public License v3.0
      1051810Updated Jan 13, 2026Jan 13, 2026
    • macpie

      Public
      R package for High-Throughput Transcriptomics
      R
      Other
      0103Updated Nov 24, 2025Nov 24, 2025
    • Introduction to Nextflow and Running nf-core Workflows Workshop
      CSS
      MIT License
      0000Updated Aug 15, 2025Aug 15, 2025
    • dinoflow

      Public
      Nextflow workflow for MAC-seq
      Groovy
      MIT License
      2000Updated Jul 23, 2025Jul 23, 2025
    • Nextflow and nf-core workshop 2025
      HTML
      MIT License
      2100Updated May 28, 2025May 28, 2025
    • Nextflow and nf-core workshop 2025
      MIT License
      2001Updated Apr 17, 2025Apr 17, 2025
    • This workshop is scheduled to take place at the The annual Australian Bioinformatics and Computational Biology Society (ABACBS) conference 2024 at University of…
      SCSS
      1000Updated Nov 6, 2024Nov 6, 2024
    • janis

      Public
      [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
      Python
      GNU General Public License v3.0
      1244132Updated Sep 17, 2023Sep 17, 2023
    • Example pipelines with Janis
      Common Workflow Language
      GNU General Public License v3.0
      6200Updated Aug 30, 2023Aug 30, 2023
    • Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
      R
      GNU General Public License v3.0
      1200Updated Aug 24, 2023Aug 24, 2023
    • A language and engine agnostic workflow runner for Janis
      Python
      GNU General Public License v3.0
      2241Updated Jul 12, 2023Jul 12, 2023
    • Python classes to loosely generate WDL
      Python
      GNU General Public License v3.0
      2311Updated Jul 12, 2023Jul 12, 2023
    • Repository of bioinformatics tools for the pipelines module
      Python
      GNU General Public License v3.0
      10240Updated Jul 12, 2023Jul 12, 2023
    • Unix tools and data types for Janis
      Python
      GNU General Public License v3.0
      10000Updated Jun 13, 2023Jun 13, 2023
    • Janis Germline Variant Calling Pipeline
      Other
      0000Updated Mar 21, 2023Mar 21, 2023
    • scripts

      Public
      Collection of Peter Mac Scripts
      Python
      GNU General Public License v3.0
      2200Updated Apr 13, 2022Apr 13, 2022
    • Configurations for Janis to run at specific organisations
      Python
      1001Updated Aug 18, 2021Aug 18, 2021
    • Janis Online Training Materials
      Python
      1100Updated May 23, 2021May 23, 2021
    • Workshops for the Janis pipeline framework
      Python
      GNU General Public License v3.0
      4300Updated May 14, 2021May 14, 2021
    • A repository of common Janis patterns
      Python
      GNU General Public License v3.0
      0000Updated Feb 2, 2021Feb 2, 2021
    • CONTRA

      Public
      Python
      GNU General Public License v2.0
      1301Updated Jan 3, 2020Jan 3, 2020
    • CWLab

      Public
      An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface
      JavaScript
      Apache License 2.0
      9000Updated Nov 14, 2019Nov 14, 2019
    • seqliner

      Public
      0000Updated Feb 22, 2016Feb 22, 2016
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