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Bump Python container from 3.11 to 3.14 in SPLIT_PEPTIDES and VARIANT_SPLIT#348

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jonasscheid merged 4 commits intonf-core:devfrom
jonasscheid:bump/python-3.14-containers
Apr 1, 2026
Merged

Bump Python container from 3.11 to 3.14 in SPLIT_PEPTIDES and VARIANT_SPLIT#348
jonasscheid merged 4 commits intonf-core:devfrom
jonasscheid:bump/python-3.14-containers

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@jonasscheid jonasscheid commented Mar 31, 2026

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nf-test test).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.

Description of changes

Bumps the biocontainers/python container tag from 3.11 to 3.14 in SPLIT_PEPTIDES and VARIANT_SPLIT modules. These are the only two modules using the bare Python container. Addresses CI failures where quay.io/biocontainers/python:3.11 returned 502 errors (older tags are less reliably cached on quay.io).

Updated all test snapshots to reflect the new Python version (3.11.103.14.3).

Test plan

  • All test snapshots updated for new Python version in SPLIT_PEPTIDES
  • CI nf-test pipeline tests

@jonasscheid jonasscheid merged commit 2a1c7f5 into nf-core:dev Apr 1, 2026
26 of 38 checks passed
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2 participants