Drop conda support temporarily#310
Merged
jonasscheid merged 4 commits intonf-core:devfrom Oct 22, 2025
Merged
Conversation
mashehu
approved these changes
Oct 22, 2025
| ### `Changed` | ||
|
|
||
| - [#296](https://github.com/nf-core/epitopeprediction/pull/296) Major rework of Fasta output: new header structure, full wildtype sequences, mutated peptides trimmed around mutation site in a flanking region of defined size and support for overlapping mutations. | ||
| - [#310](https://github.com/nf-core/epitopeprediction/pull/310) Drop conda support temporarily until conda lock file support is implemented |
There was a problem hiding this comment.
are lock files really the problem here? isn't it more that the underlying packages don't support modern python?
Collaborator
Author
There was a problem hiding this comment.
Correct, not 100% sure if it would work with lock files, but I still have working environments with old python versions
Collaborator
Author
|
Thanks! |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
See this discussion in Slack: https://nfcore.slack.com/archives/CM46YC6BZ/p1761058849919089
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).