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Small suggestions #29
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77ecf62
fix: remove .snakemake dir from clean
corneliusroemer 0da48e0
Add default snakemake profile for ergonomics
corneliusroemer ba93a59
Add basic "running the workflow" to README
corneliusroemer 9585334
Fix precommit exclude
corneliusroemer d9c8599
precommit fixes
corneliusroemer 82b0263
snakemake ergonomics
corneliusroemer f3a7772
nextclade readme edit
corneliusroemer 29a9cc0
Remove .snakemake dir from clean
corneliusroemer 72a1eb9
force `rm -rf` is a typo away from bad things, maybe unnecessary as w…
corneliusroemer 3fc85d0
E712 has false positives for pandas so let's just disable
corneliusroemer 14ecd2b
Fix Nextclade tree title, add extra (free) metadata to coloring
corneliusroemer 3d0e98f
Print export output, helpful for debugging
corneliusroemer 9dbb8ac
fix forgotten trailing \
corneliusroemer 495d298
Systematic logging to logfile and stdout
corneliusroemer acf9166
don't clean .snakemake with snakemake
corneliusroemer f16bedc
add default profile
corneliusroemer c8d3527
fix missing trailing \
corneliusroemer 51611fe
Add sample sequences to nextclade defaults to make the dataset proper…
corneliusroemer 6e61385
Add how to test the nextclade dataset
corneliusroemer 6264414
Try different clade E1 tsv
corneliusroemer 337ebee
General phylogenetic improvements
corneliusroemer 846bcf0
Clades tweaks
corneliusroemer ff3f4b4
Fix precommit
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| cores: all | ||
| printshellcmds: true | ||
| ri: true | ||
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Do you know you can make these your global default by putting the profile somewhere shared and setting
SNAKEMAKE_PROFILE, e.g.