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3.21.0

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@nextstrain-bot nextstrain-bot released this 17 Mar 09:42
3.21.0
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3.21.0

Docker: arm64 multi-platform images

Docker images are now built for both amd64 and arm64 architectures. Pulling any Nextclade Docker image on an ARM64 host (Apple Silicon, AWS Graviton, Raspberry Pi) now gets a native image instead of requiring emulation. See #1761, #1762.

Docker: multiple base image versions

Docker images are now published for multiple base image versions: 6 Alpine releases and 3 Debian releases, covering approximately 3 and 5 years respectively. Users can pin to a specific base version using tags like :alpine3.18 or :debian11. Unversioned tags (:alpine, :debian) point to the latest base version. See the full list of available tags and platforms on Docker Hub.

Docker: breaking changes

  • Default Debian base image changed from Debian 11 (Bullseye) to Debian 13 (Trixie). Users depending on Debian 11 can pin to :debian11.
  • Scratch image: binary moved from /nextclade to /usr/bin/nextclade. Using nextclade without a path still works. Users referencing the absolute path /nextclade should update to /usr/bin/nextclade.

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.

⌨️ Source code is on GitHub: github.com/nextstrain/nextclade

🚩 Report bugs, suggest features by submitting a GitHub issue

💾 Nextclade datasets are here
Assets 9
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