0.0.1-a25

What's new in v0.0.1-a25

Breaking changes

• The index of the dataset from Nunez-Elizalde et al. (2022) has changed. Users that have already downloaded it should re-download the dataset.

New features

• Add fetcher functions for Cybis Pereira et al. (2026) dataset (#48)

Bug fixes

• Track viewer resizing in napari plugin guided tour overlay (#47)
• Prevent scalar volumes from being treated as RGB

Documentation

• User guide for using and fetching datasets is now up. Try using it with Nunez-Elizalde et al. (2022) or Cybis Pereira et al. (2026)!

0.0.1-a24

What's new in v0.0.1-a24

New features

• Added a new confusius.datasets module with a fetcher for the Nunez-Elizalde et al. (2022) dataset.

Bug fixes

• Converted complex image data to magnitude in napari displays.
• Prevented napari sidebar cropping for long layer names.
• Normalized echoframe probe pitch units to millimeters.
• Aligned plugin code with napari 0.7.
• Restored clutter and integration timing metadata.

Documentation

• Updated documentation pages to use the Nunez-Elizalde et al. (2022) dataset.

0.0.1-a23

What's new in v0.0.1-a23

New features

• (napari) Add guided sidebar tour
• (napari) Add click-to-navigate on matplotlib plots
• (napari) Add time overlay displaying current time coordinate in viewer

Documentation

• Add team page

0.0.1-a22

What's new in v0.0.1-a22

New features

• Support 2D (time, space) input in extract_with_mask and plot_carpet.
• Implement correct_slice_timings for slice-timing correction.

Bug fixes

• Infer per-pose duration from first pose, not volume end time, when loading SCAN files.
• Use max timestamp for end-referenced block_time in SCAN loader.
• Inherit reference affines on resampled outputs.
• Avoid duplicating header affines in NIfTI sidecars.

Improvements

• Derive SCAN DataArray name from Scan_tag only.

Documentation

• Improve citing page.

0.0.1-a21

What's new in v0.0.1-a21

New features

• Standardize acquisition timing metadata.

Bug fixes

• Preserve scan acquisition timing metadata through consolidation and NIfTI export.

0.0.1-a20

What's new in v0.0.1-a20

Bug fixes

• NaN validation, renames, nearest interp in registration module.
• Fix CompositeTransform sub-transform composition order.
• Use canvas rendering in progress plotter.

Improvements

• Improve fUSI-BIDS validation warning formatting

0.0.1-a19

What's new in v0.0.1-a19

New features

• Add live series color customization for labels mode.

Bug fixes

• Fix labels shape mismatch and point color sync in signal plotter.
• Force numpydoc to read using UTF-8 on all platforms (#30).
• Set windows shell in justfile (#29).
• Handle string-based coordinates in .fusi.origin

Documentation

• Update Signals Panel user guide and screenshot script.

Improvements

• Optimize and clean up IQ processing API.

0.0.1-a18

What's new in v0.0.1-a18

New features

• Add time series import, store, and manager with overlay support
• Add napari plot export actions

Documentation

• Change docs URL to https://confusius.tools
• Clarify format handling for user guide

0.0.1-a17

What's new in v0.0.1-a17

New features

• Add fUSI-BIDS metadata support for NIfTI sidecars.

0.0.1-a16

What's new in v0.0.1-a16

New features

• Add Data I/O tab to the napari plugin with a save panel (NIfTI and Zarr)
• Register native NIfTI and Zarr file writers for napari
• Add path and --lazy arguments to the confusius CLI

Bug fixes

• Prevent tab shift when the plugin is selected (left border compensation)
• Smooth time series panel opening animation
• Shorten non-uniform spacing warning for notification toast

Improvements

• Pass raw array to napari.imshow instead of DataArray for better performance
• Set layer.metadata["xarray"] in plot_napari for downstream access
• Improve non-uniform spacing handling and notifications

Documentation

• Add full plugin guide with screenshots (gui/ section)
• Revise and expand the Getting Started page