Skip to content

v0.7.0

Choose a tag to compare

@github-actions github-actions released this 12 Mar 23:45

Added

  • Support for setting a custom minimum gene length in pyrodigal.OrfFinder.
  • Genes.write_scores method to write the node scores to a file.
  • Gene.__repr__ and Node.__repr__ methods to display some useful attributes.
  • Sequence.__str__ method to get back a nucleotide string from a Sequence object.

Changed

  • Use a more compact data structure to store Gene data.

Fixed

  • Nodes._calc_orf_gc reading nucleotides after the sequence end when computing GC content for edge nodes.

Removed

  • pyrodigal.Pyrodigal class (use pyrodigal.OrfFinder instead).
  • pyrodigal.Predictions class (functionality merged into pyrodigal.Genes).