This is the bioinformatIcs site of Wang Xiaoyue Lab from PUMC.
If you have any questions or suggestions, please contact with us!
- Corresponding author: [email protected]
- Maintainer: [email protected]
- Aperture @article (Brief in Bioinformatics 2021)Aperture: alignment-free detection of structural variations and viral integrations in circulating tumor DNA
- OSCAR @article (Genome Biology 2023)In-organoid single-cell CRISPR screening reveals determinants of hepatocyte differentiation and maturation
- FunUV @article (Brief in Bioinformatics 2024)Predicting functional UTR variants by integrating region-specific features
- BEguider @article(Communications Biology 2024)Comprehensive evaluation and prediction of editing outcomes for near-PAMless adenine and cytosine base editors
- Endometriotic Lesions@article(Cell Genomics 2024) Single-cell and spatial transcriptomic profiling revealed niche interactions sustaining growth of endometriotic lesions
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| pipline | for | analysis |
|---|---|---|
| 👁 PICASSO the code base of single cell omics |
🦕 VINCI the code base of bulk omics |
⛓ VEGA-kit the code for genomic analysis including annotation , function, sequence and motif analysis |
| 👴 FISHER the code base of statistics and machine learning |
🌈 PABLO the code base of python for omics |
- .github: basic configuration
- 🧯packages_and_debug: the packages you should install and the bugs need to be solved
- 👮♂️cyber: the system of project management and result report
- 🚀JET: the code accelerating R