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@ToxMCP

ToxMCP

Guardrailed, auditable MCP servers for computational toxicology workflows via the Model Context Protocol (MCP).

ToxMCP

ToxMCP is a suite of guardrailed, auditable MCP servers for computational toxicology, exposure science, mechanistic reasoning, and downstream kinetic workflows.

This org page is the front door. The canonical suite hub, onboarding path, and public module map live in ToxMCP/toxmcp.

⭐ Start Here

🧪 Public Modules

  • CompTox MCP: EPA CompTox-backed identity, hazard, exposure, and bioactivity workflows
  • Direct-Use Exposure MCP: auditable deterministic exposure-scenario construction and PBPK-ready handoff
  • PBPK MCP: toxicokinetic simulation, qualification, and dossier-facing outputs
  • AOP MCP: AOP discovery, mechanistic reasoning, and scientific draft support
  • O-QT MCP: OECD QSAR Toolbox automation, grouping, read-across, and reports
  • ADMETlab MCP: rapid ADMET utility workflows and prediction support

Additional modules in progress include dietary exposure, environmental fate, and bioactivity-to-PoD workflows.

✨ What To Expect

  • Auditable by design with explicit assumptions, provenance, and structured outputs
  • MCP-native tooling for agent frameworks, notebooks, and orchestrated workflows
  • Scientifically bounded modules that stay clear about their claims and limits
  • Modular across domains so exposure, hazard, mechanistic, QSAR, and PBPK workflows can interoperate cleanly

📚 Acknowledgements / Origins

ToxMCP was developed, in part, in the context of the VHP4Safety project and related research and engineering efforts in computational toxicology and next-generation risk assessment.

Funding: Dutch Research Council (NWO) — NWA.1292.19.272 (NWA programme)

This suite integrates with third-party data sources and services, including EPA CompTox, ADMETlab, AOP resources, OECD QSAR Toolbox, and Open Systems Pharmacology. Those upstream resources are owned and governed by their respective providers, and users remain responsible for meeting the access, API key, rate limit, and license or EULA requirements described by each module.

Popular repositories Loading

  1. toxmcp toxmcp Public

    Umbrella repo for the ToxMCP Suite (docs, links, quickstart).

    15 3

  2. comptox-mcp comptox-mcp Public

    Evidence federation MCP server for the EPA CompTox API

    Python 4 2

  3. pbpk-mcp pbpk-mcp Public

    MCP server for PBPK modeling workflows (simulation control + PK analytics).

    Python 3 2

  4. aop-mcp aop-mcp Public

    MCP server for Adverse Outcome Pathway (AOP) discovery, semantics, and draft authoring.

    Python 3 1

  5. oqt-mcp oqt-mcp Public

    MCP server for OECD QSAR Toolbox workflows with structured outputs and PDF reports.

    Python 1 1

  6. admetlab-mcp admetlab-mcp Public

    MCP server for ADMETlab 3.0 (washing, ADMET prediction, rendering, CSV retrieval).

    Python 1 1

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