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Document published and default parameterizations #194

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dlebauer wants to merge 13 commits intomasterfrom
parameterizations_docs
Open

Document published and default parameterizations #194
dlebauer wants to merge 13 commits intomasterfrom
parameterizations_docs

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@dlebauer dlebauer commented Nov 20, 2025

  • New document that can be used to document the source of informed priors.
  • In the process:
    • revised the model so that the prior I wanted to document is no longer relevant.
    • biggest contribution is a compilation and documentation of previous parameterizations

The next time someone comes up with some numbers from the literature or expert opinion (or calibration) they have a place to put them. While creating it I also realized that a table of priors would be most useful as a CSV ... but an md file would still be useful for documentation and rationale.

@dlebauer dlebauer marked this pull request as ready for review April 14, 2026 23:42
Copilot AI review requested due to automatic review settings April 14, 2026 23:42
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Pull request overview

Adds a new documentation page to capture SIPNET parameter values across key studies and existing .param templates, with provenance/rationale notes so future “informed prior” parameterizations have a consistent place to live.

Changes:

  • Introduces docs/parameterizations.md with a wide table compiling parameter names, symbols, values from multiple publications, and defaults from several .param files.
  • Adds brief guidance on intended use, scope limits, and a note that a CSV may ultimately be a better format for the table.

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Comment thread docs/parameterizations.md Outdated
Comment thread docs/parameterizations.md Outdated
dlebauer and others added 2 commits April 14, 2026 19:03
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