-
Notifications
You must be signed in to change notification settings - Fork 71
Expand file tree
/
Copy path_pkgdown.yml
More file actions
243 lines (236 loc) · 8.55 KB
/
_pkgdown.yml
File metadata and controls
243 lines (236 loc) · 8.55 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
url: https://wadpac.github.io/GGIR/
template:
bootstrap: 5
bslib:
primary: "#0054AD"
border-radius: 0.5rem
btn-border-radius: 0.25rem
includes:
in_header:
<script defer data-domain="pkgdown.r-lib.org,all.tidyverse.org" src="https://plausible.io/js/plausible.js"></script>
authors:
sidebar:
roles: [aut]
home:
title: GGIR R Package
navbar:
components:
intro:
text: Get started
href: articles/chapter0_GetStarted.html
installation:
text: Installation
href: articles/chapter0_Installation.html
help:
text: Need help?
href: articles/chapter0_Support.html
contributing:
text: Contributing
href: articles/chapter0_Contributing.html
chapters:
text: The book
menu:
- text: 1. What is GGIR
href: articles/chapter1_WhatIsGGIR.html
- text: 2. The GGIR Pipeline
href: articles/chapter2_Pipeline.html
- text: 3. Data Quality Assurance
href: articles/chapter3_QualityAssessment.html
- text: 4. From Raw Data to Acceleration Metrics
href: articles/chapter4_AccMetrics.html
- text: 5. Accounting for Study Protocol
href: articles/chapter5_StudyProtocol.html
- text: 6. How GGIR Deals with Invalid Data
href: articles/chapter6_DataImputation.html
- text: 7. Describing the Data Without Knowing Sleep
href: articles/chapter7_DescribingDataWithoutKnowingSleep.html
- text: 8. Sleep Fundamentals - Sustained Inactivity Bout Detection (SIB)
href: articles/chapter8_SleepFundamentalsSibs.html
- text: 9. Sleep Fundamentals - Guiding Sleep Detection
href: articles/chapter9_SleepFundamentalsGuiders.html
- text: 10. Sleep Analysis
href: articles/chapter10_SleepAnalysis.html
- text: 11. Physical Activity Fundamentals - Describing the data with cut-points
href: articles/chapter11_DescribingDataCutPoints.html
- text: 12. Time-Use Analysis
href: articles/chapter12_TimeUseAnalysis.html
- text: 13. Circadian Rhythm Analysis
href: articles/chapter13_CircadianRhythm.html
- text: 14. Behavioural Fragmentation
href: articles/chapter14_BehaviouralFragmentation.html
annexes:
text: Annexes
menu:
- text: GGIR Parameters
href: articles/GGIRParameters.html
- text: GGIR Output
href: articles/GGIRoutput.html
- text: Reading csv files with raw data
href: articles/readmyacccsv.html
- text: Embedding external functions in GGIR
href: articles/ExternalFunction.html
- text: Published cut-points and how to use them
href: articles/CutPoints.html
- text: Day-segment analyses
href: articles/TutorialDaySegmentAnalyses.html
- text: Household co-analysis
href: articles/HouseHoldCoanalysis.html
- text: Cookbook
href: articles/Cookbook.html
- text: Date and Time formats in R
href: articles/DateTimeFormatsInR.html
- text: Sleep Regularity Index
href: articles/SleepRegularityIndex.html
- text: Nap Detection
href: articles/NapDetection.html
- text: Step and Cadence Analysis
href: articles/StepCadenceAnalysis.html
structure:
left: [chapters, annexes, installation, intro, news, contributing, help]
right: [search, github]
news:
cran_dates: TRUE
releases:
- text: "Version 3.3-0"
href: https://www.accelting.com/ggir-release-3-3-0/
- text: "Version 3.2-6"
href: https://www.accelting.com/ggir-release-3-2-6/
- text: "Version 3.2-0"
href: https://www.accelting.com/ggir-release-3-2-0/
- text: "Version 3.1-5"
href: https://www.accelting.com/ggir-release-3-1-5/
- text: "Version 3.1-0"
href: https://www.accelting.com/ggir-release-3-1-0/
- text: "Version 3.0-0"
href: https://www.accelting.com/ggir-release-3-0-0/
- text: "Version 2.9-0"
href: https://www.accelting.com/ggir-release-2-9-0/
- text: "Version 2.8-0"
href: https://www.accelting.com/ggir-release-2-8-0/
- text: "Version 2.7-1"
href: https://www.accelting.com/ggir-release-2-7-1/
- text: "Version 2.6-0"
href: https://www.accelting.com/ggir-release-2-6-0/
- text: "Version 2.5-0"
href: https://www.accelting.com/ggir-release-2-5-0/
search:
exclude: ['news/index.html', 'articles/GGIR.html',
"reference/ABI.html",
"reference/addSplitNames.html",
"reference/aggregateEvent.html",
"reference/appendRecords.html",
"reference/apply_cosinor_IS_IV_Analyses.html",
"reference/applyExtFunction.html",
"reference/CalcSleepRegularityIndex.html",
"reference/check_log.html",
"reference/check_myfun.html",
"reference/check_params.html",
"reference/checkMilestoneFolders.html",
"reference/convertEpochData.html",
"reference/correctOlderMilestoneData.html",
"reference/cosinor_IS_IV_Analyses.html",
"reference/create_test_acc_csv.html",
"reference/create_test_sleeplog_csv.html",
"reference/createConfigFile.html",
"reference/data.calibrate.html",
"reference/data.getmeta.html",
"reference/data.inspectfile.html",
"reference/data.metalong.html",
"reference/data.ts.html",
"reference/datadir2fnames.html",
"reference/detect_nonwear_clipping.html",
"reference/DFA.html",
"reference/extract_params.html",
"reference/extractID.html",
"reference/filterNonwearNight.html",
"reference/g.abr.day.names.html",
"reference/g.analyse.avday.html",
"reference/g.analyse.html",
"reference/g.analyse.perday.html",
"reference/g.analyse.perfile.html",
"reference/g.applymetrics.html",
"reference/g.calibrate.html",
"reference/g.conv.actlog.html",
"reference/g.convert.part2.long.html",
"reference/g.create.sp.mat.html",
"reference/g.detecmidnight.html",
"reference/g.dotorcomma.html",
"reference/g.extractheadervars.html",
"reference/g.fragmentation.html",
"reference/g.getbout.html",
"reference/g.getM5L5.html",
"reference/g.getmeta.html",
"reference/g.getstarttime.html",
"reference/g.impute.html",
"reference/g.imputeTimegaps.html",
"reference/g.inspectfile.html",
"reference/g.intensitygradient.html",
"reference/g.IVIS.html",
"reference/g.loadlog.html",
"reference/g.part1.html",
"reference/g.part2.html",
"reference/g.part3.html",
"reference/g.part3_alignIndexVectors.html",
"reference/g.part3_correct_guider.html",
"reference/g.part4.html",
"reference/g.part4_extradctid.html",
"reference/g.part5.addfirstwake.html",
"reference/g.part5.addsib.html",
"reference/g.part5.analyseRest.html",
"reference/g.part5.definedays.html",
"reference/g.part5.fixmissingnight.html",
"reference/g.part5.handle_lux_extremes.html",
"reference/g.part5.html",
"reference/g.part5.lux_persegment.html",
"reference/g.part5.ontsetwaketiming.html",
"reference/g.part5.savetimeseries.html",
"reference/g.part5.wakesleepwindows.html",
"reference/g.part5_analyseSegment.html",
"reference/g.part5_initialise_ts.html",
"reference/g.part6.html",
"reference/g.plot.html",
"reference/g.plot5.html",
"reference/g.readaccfile.html",
"reference/g.readtemp_movisens.html",
"reference/g.report.part2.html",
"reference/g.report.part4.html",
"reference/g.report.part5.html",
"reference/g.report.part5_dictionary.html",
"reference/g.report.part6.html",
"reference/g.shell.GGIR.html",
"reference/g.sib.det.html",
"reference/g.sib.plot.html",
"reference/g.sib.sum.html",
"reference/g.sibreport.html",
"reference/g.weardec.html",
"reference/get_nw_clip_block_params.html",
"reference/get_starttime_weekday_truncdata.html",
"reference/getfolderstructure.html",
"reference/getPart1BasicInfo.html",
"reference/getSplitNames.html",
"reference/GGIR-package.html",
"reference/GGIR.html",
"reference/HASIB.html",
"reference/HASPT.html",
"reference/identify_levels.html",
"reference/index.html",
"reference/inspect_binFile_brand.html",
"reference/is.ISO8601.html",
"reference/is_this_a_dst_night.html",
"reference/isfilelist.html",
"reference/ismovisens.html",
"reference/iso8601chartime2POSIX.html",
"reference/load_params.html",
"reference/markerButtonForRest.html",
"reference/MXLX.html",
"reference/parametersVignette.html",
"reference/part6AlignIndividuals.html",
"reference/part6PairwiseAggregation.html",
"reference/POSIXtime2iso8601.html",
"reference/read.myacc.csv.html",
"reference/ShellDoc2Vignette.html",
"reference/splitRecords.html",
"reference/SSP.html",
"reference/tidyup_df.html",
"reference/updateBlocksize.html",
"reference/visualReport.html"]