As pointed out in this slack thread
there is issue with hypermutated flag in cancer report. it was introduce in gpgr PR#83
option point out by stephen here
Conceptually the ‘sage’ variants would be more complete since that includes rescue variants, though this may still not be the best representation of mutational load since it also includes non-passing DRAGEN variants at that point iirc
Some options to consider:
-modify the status check wrt which variants are considered
-possibly reverting the flag conditional to how I initially implemented (less explicit but does not rely on re-inferring status)
-moving the status check in gpgr Cancer Report to bolt where this already happens (personally preferred approach)
As pointed out in this slack thread
there is issue with hypermutated flag in cancer report. it was introduce in gpgr PR#83
option point out by stephen here