diff --git a/Makefile b/Makefile
index 39cd966..afc6e21 100644
--- a/Makefile
+++ b/Makefile
@@ -16,6 +16,7 @@ doc:
 	@pdoc --force --html pyriandx -o docs/
 	@py.test --cov-report html:docs/coverage --cov=pyriandx tests/
 	@rm -rf docs/.buildinfo
+	@rm -rf docs/.buildinfo.bak
 	@rm -rf docs/coverage/status.json
 
 test:
diff --git a/docs/_static/alabaster.css b/docs/_static/alabaster.css
index e3174bf..7e75bf8 100644
--- a/docs/_static/alabaster.css
+++ b/docs/_static/alabaster.css
@@ -1,5 +1,3 @@
-@import url("basic.css");
-
 /* -- page layout ----------------------------------------------------------- */
 
 body {
@@ -160,8 +158,8 @@ div.sphinxsidebar input {
     font-size: 1em;
 }
 
-div.sphinxsidebar #searchbox input[type="text"] {
-    width: 160px;
+div.sphinxsidebar #searchbox {
+    margin: 1em 0;
 }
 
 div.sphinxsidebar .search > div {
@@ -263,10 +261,6 @@ div.admonition p.last {
     margin-bottom: 0;
 }
 
-div.highlight {
-    background-color: #fff;
-}
-
 dt:target, .highlight {
     background: #FAF3E8;
 }
@@ -454,7 +448,7 @@ ul, ol {
 }
 
 pre {
-    background: #EEE;
+    background: unset;
     padding: 7px 30px;
     margin: 15px 0px;
     line-height: 1.3em;
@@ -485,15 +479,15 @@ a.reference {
     border-bottom: 1px dotted #004B6B;
 }
 
+a.reference:hover {
+    border-bottom: 1px solid #6D4100;
+}
+
 /* Don't put an underline on images */
 a.image-reference, a.image-reference:hover {
     border-bottom: none;
 }
 
-a.reference:hover {
-    border-bottom: 1px solid #6D4100;
-}
-
 a.footnote-reference {
     text-decoration: none;
     font-size: 0.7em;
@@ -509,68 +503,7 @@ a:hover tt, a:hover code {
     background: #EEE;
 }
 
-
-@media screen and (max-width: 870px) {
-
-    div.sphinxsidebar {
-    	display: none;
-    }
-
-    div.document {
-       width: 100%;
-
-    }
-
-    div.documentwrapper {
-    	margin-left: 0;
-    	margin-top: 0;
-    	margin-right: 0;
-    	margin-bottom: 0;
-    }
-
-    div.bodywrapper {
-    	margin-top: 0;
-    	margin-right: 0;
-    	margin-bottom: 0;
-    	margin-left: 0;
-    }
-
-    ul {
-    	margin-left: 0;
-    }
-
-	li > ul {
-        /* Matches the 30px from the "ul, ol" selector above */
-		margin-left: 30px;
-	}
-
-    .document {
-    	width: auto;
-    }
-
-    .footer {
-    	width: auto;
-    }
-
-    .bodywrapper {
-    	margin: 0;
-    }
-
-    .footer {
-    	width: auto;
-    }
-
-    .github {
-        display: none;
-    }
-
-
-
-}
-
-
-
-@media screen and (max-width: 875px) {
+@media screen and (max-width: 940px) {
 
     body {
         margin: 0;
@@ -580,12 +513,16 @@ a:hover tt, a:hover code {
     div.documentwrapper {
         float: none;
         background: #fff;
+        margin-left: 0;
+        margin-top: 0;
+        margin-right: 0;
+        margin-bottom: 0;
     }
 
     div.sphinxsidebar {
         display: block;
         float: none;
-        width: 102.5%;
+        width: unset;
         margin: 50px -30px -20px -30px;
         padding: 10px 20px;
         background: #333;
@@ -620,8 +557,14 @@ a:hover tt, a:hover code {
 
     div.body {
         min-height: 0;
+        min-width: auto; /* fixes width on small screens, breaks .hll */
         padding: 0;
     }
+    
+    .hll {
+        /* "fixes" the breakage */
+        width: max-content;
+    }
 
     .rtd_doc_footer {
         display: none;
@@ -635,13 +578,18 @@ a:hover tt, a:hover code {
         width: auto;
     }
 
-    .footer {
-        width: auto;
-    }
-
     .github {
         display: none;
     }
+
+    ul {
+        margin-left: 0;
+    }
+
+    li > ul {
+       /* Matches the 30px from the "ul, ol" selector above */
+        margin-left: 30px;
+    }
 }
 
 
@@ -705,4 +653,11 @@ nav#breadcrumbs li+li:before {
     div.related {
         display: none;
     }
+}
+
+img.github  {
+    position: absolute;
+    top: 0;
+    border: 0;
+    right: 0;
 }
\ No newline at end of file
diff --git a/docs/_static/github-banner.svg b/docs/_static/github-banner.svg
new file mode 100644
index 0000000..c47d9dc
--- /dev/null
+++ b/docs/_static/github-banner.svg
@@ -0,0 +1,5 @@
+<svg xmlns="http://www.w3.org/2000/svg" width="80" height="80" viewBox="0 0 250 250" fill="#fff">
+    <path d="M0 0l115 115h15l12 27 108 108V0z" fill="#151513"/>
+    <path d="M128 109c-15-9-9-19-9-19 3-7 2-11 2-11-1-7 3-2 3-2 4 5 2 11 2 11-3 10 5 15 9 16"/>
+    <path d="M115 115s4 2 5 0l14-14c3-2 6-3 8-3-8-11-15-24 2-41 5-5 10-7 16-7 1-2 3-7 12-11 0 0 5 3 7 16 4 2 8 5 12 9s7 8 9 12c14 3 17 7 17 7-4 8-9 11-11 11 0 6-2 11-7 16-16 16-30 10-41 2 0 3-1 7-5 11l-12 11c-1 1 1 5 1 5z"/>
+</svg>
diff --git a/docs/changelog.html b/docs/changelog.html
index 4d84c4d..31523be 100644
--- a/docs/changelog.html
+++ b/docs/changelog.html
@@ -7,7 +7,8 @@
 
     <title>CHANGE LOG &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
@@ -34,7 +35,18 @@
   <section id="change-log">
 <h1>CHANGE LOG<a class="headerlink" href="#change-log" title="Link to this heading">¶</a></h1>
 <section id="id1">
-<h2>0.3.0<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2>
+<h2>0.4.0<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2>
+<ul class="simple">
+<li><p>Release date: 2026-03-05</p></li>
+<li><p>Improved project setup to <code class="docutils literal notranslate"><span class="pre">pyproject.toml</span></code></p></li>
+<li><p>Bumped urllib3 v2.0</p></li>
+<li><p>Added support <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.10</span></code> to <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.14</span></code></p></li>
+<li><p>Dropped support <code class="docutils literal notranslate"><span class="pre">Python</span> <span class="pre">3.9</span></code> and lower</p></li>
+<li><p>See <a class="reference external" href="https://github.com/umccr/pyriandx/milestone/2?closed=1">milestone 0.4.0 for all related PRs</a></p></li>
+</ul>
+</section>
+<section id="id2">
+<h2>0.3.0<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>Release date: 2022-08-30</p></li>
 <li><p>Bug fix: <code class="docutils literal notranslate"><span class="pre">PDX_BASE_URL</span></code> env var</p></li>
@@ -46,8 +58,8 @@ <h2>0.3.0<a class="headerlink" href="#id1" title="Link to this heading">¶</a></
 <li><p>See <a class="reference external" href="https://github.com/umccr/pyriandx/milestone/1?closed=1">milestone 0.3.0 for all related PRs</a></p></li>
 </ul>
 </section>
-<section id="id2">
-<h2>0.2.0<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2>
+<section id="id3">
+<h2>0.2.0<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2>
 <ul class="simple">
 <li><p>Release date: 2020-05-22</p></li>
 <li><p>New overhaul CLI with command-driven interface implementation</p></li>
@@ -75,14 +87,24 @@ <h1 class="logo"><a href="index.html">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
+<search id="searchbox" style="display: none" role="search">
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false" placeholder="Search"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="user.html">USER GUIDE</a></li>
 <li class="toctree-l1"><a class="reference internal" href="developer.html">DEVELOPER GUIDE</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">CHANGE LOG</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="#id1">0.3.0</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#id2">0.2.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#id1">0.4.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#id2">0.3.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#id3">0.2.0</a></li>
 </ul>
 </li>
 </ul>
@@ -95,16 +117,6 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<search id="searchbox" style="display: none" role="search">
-  <h3 id="searchlabel">Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
-      <input type="submit" value="Go" />
-    </form>
-    </div>
-</search>
-<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -122,7 +134,7 @@ <h3 id="searchlabel">Quick search</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
       |
       <a href="_sources/changelog.rst.txt"
diff --git a/docs/coverage/class_index.html b/docs/coverage/class_index.html
index 836bfac..dfb746e 100644
--- a/docs/coverage/class_index.html
+++ b/docs/coverage/class_index.html
@@ -55,7 +55,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </header>
@@ -195,14 +195,14 @@ <h2>
                 <td data-ratio="86 117">74%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t21">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t21"><data value='Client'>Client</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t20">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t20"><data value='Client'>Client</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>108</td>
-                <td>102</td>
+                <td>103</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="6 108">6%</td>
+                <td data-ratio="5 108">5%</td>
             </tr>
             <tr class="region">
                 <td class="name"><a href="z_10afcb99a7eb7404_client_py.html">pyriandx&#8201;/&#8201;client.py</a></td>
@@ -231,10 +231,10 @@ <h2>
                 <td class="name">&nbsp;</td>
                 <td class="spacer">&nbsp;</td>
                 <td>437</td>
-                <td>178</td>
+                <td>179</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="259 437">59%</td>
+                <td data-ratio="258 437">59%</td>
             </tr>
         </tfoot>
     </table>
@@ -246,7 +246,7 @@ <h2>
     <div class="content">
         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
     <aside class="hidden">
diff --git a/docs/coverage/function_index.html b/docs/coverage/function_index.html
index 9255d5d..8eef435 100644
--- a/docs/coverage/function_index.html
+++ b/docs/coverage/function_index.html
@@ -55,7 +55,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </header>
@@ -285,18 +285,28 @@ <h2>
                 <td data-ratio="45 45">100%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t23">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t23"><data value='init__'>Client.__init__</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t22">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t22"><data value='init__'>Client.__init__</data></a></td>
                 <td class="spacer">&nbsp;</td>
-                <td>8</td>
+                <td>6</td>
+                <td>1</td>
+                <td>0</td>
+                <td class="spacer">&nbsp;</td>
+                <td data-ratio="5 6">83%</td>
+            </tr>
+            <tr class="region">
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t34">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t34"><data value='load_json_template'>Client._load_json_template</data></a></td>
+                <td class="spacer">&nbsp;</td>
+                <td>2</td>
                 <td>2</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="6 8">75%</td>
+                <td data-ratio="0 2">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t41">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t41"><data value='create_case'>Client.create_case</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t38">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t38"><data value='create_case'>Client.create_case</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>6</td>
                 <td>6</td>
@@ -305,28 +315,28 @@ <h2>
                 <td data-ratio="0 6">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t50">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t50"><data value='create_sequencer_run'>Client.create_sequencer_run</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t47">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t47"><data value='create_sequencer_run'>Client.create_sequencer_run</data></a></td>
                 <td class="spacer">&nbsp;</td>
-                <td>8</td>
-                <td>8</td>
+                <td>7</td>
+                <td>7</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="0 8">0%</td>
+                <td data-ratio="0 7">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t61">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t61"><data value='create_job'>Client.create_job</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t57">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t57"><data value='create_job'>Client.create_job</data></a></td>
                 <td class="spacer">&nbsp;</td>
-                <td>12</td>
-                <td>12</td>
+                <td>11</td>
+                <td>11</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="0 12">0%</td>
+                <td data-ratio="0 11">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t76">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t76"><data value='create_job_vcf'>Client.create_job_vcf</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t71">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t71"><data value='create_job_vcf'>Client.create_job_vcf</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>3</td>
                 <td>3</td>
@@ -335,8 +345,8 @@ <h2>
                 <td data-ratio="0 3">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t82">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t82"><data value='get_job_status'>Client.get_job_status</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t77">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t77"><data value='get_job_status'>Client.get_job_status</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>12</td>
                 <td>12</td>
@@ -345,18 +355,18 @@ <h2>
                 <td data-ratio="0 12">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t101">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t101"><data value='get_report'>Client.get_report</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t96">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t96"><data value='get_report'>Client.get_report</data></a></td>
                 <td class="spacer">&nbsp;</td>
-                <td>14</td>
-                <td>14</td>
+                <td>16</td>
+                <td>16</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="0 14">0%</td>
+                <td data-ratio="0 16">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t125">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t125"><data value='upload_file'>Client.upload_file</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t122">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t122"><data value='upload_file'>Client.upload_file</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>5</td>
                 <td>5</td>
@@ -365,8 +375,8 @@ <h2>
                 <td data-ratio="0 5">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t133">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t133"><data value='get_case_info'>Client.get_case_info</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t130">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t130"><data value='get_case_info'>Client.get_case_info</data></a></td>
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-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t137">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t137"><data value='list_cases'>Client.list_cases</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t134">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t134"><data value='list_cases'>Client.list_cases</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>1</td>
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@@ -385,8 +395,8 @@ <h2>
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-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t141">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t141"><data value='get'>Client.get</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t138">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t138"><data value='get'>Client.get</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>1</td>
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@@ -395,8 +405,8 @@ <h2>
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             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t147">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t147"><data value='get_api'>Client._get_api</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t144">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t144"><data value='get_api'>Client._get_api</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>14</td>
                 <td>14</td>
@@ -405,8 +415,8 @@ <h2>
                 <td data-ratio="0 14">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t168">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t168"><data value='post'>Client.post</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t165">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t165"><data value='post'>Client.post</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>1</td>
                 <td>1</td>
@@ -415,8 +425,8 @@ <h2>
                 <td data-ratio="0 1">0%</td>
             </tr>
             <tr class="region">
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t174">pyriandx&#8201;/&#8201;client.py</a></td>
-                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t174"><data value='post_api'>Client._post_api</data></a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t171">pyriandx&#8201;/&#8201;client.py</a></td>
+                <td class="name"><a href="z_10afcb99a7eb7404_client_py.html#t171"><data value='post_api'>Client._post_api</data></a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>22</td>
                 <td>22</td>
@@ -461,10 +471,10 @@ <h2>
                 <td class="name">&nbsp;</td>
                 <td class="spacer">&nbsp;</td>
                 <td>437</td>
-                <td>178</td>
+                <td>179</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="259 437">59%</td>
+                <td data-ratio="258 437">59%</td>
             </tr>
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@@ -476,7 +486,7 @@ <h2>
     <div class="content">
         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
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diff --git a/docs/coverage/index.html b/docs/coverage/index.html
index ad6e7c8..cce6a27 100644
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@@ -54,7 +54,7 @@ <h2>
         </h2>
         <p class="text">
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </header>
@@ -103,10 +103,10 @@ <h2>
                 <td class="name"><a href="z_10afcb99a7eb7404_client_py.html">pyriandx&#8201;/&#8201;client.py</a></td>
                 <td class="spacer">&nbsp;</td>
                 <td>134</td>
-                <td>102</td>
+                <td>103</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="32 134">24%</td>
+                <td data-ratio="31 134">23%</td>
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@@ -123,10 +123,10 @@ <h2>
                 <td class="name">Total</td>
                 <td class="spacer">&nbsp;</td>
                 <td>437</td>
-                <td>178</td>
+                <td>179</td>
                 <td>0</td>
                 <td class="spacer">&nbsp;</td>
-                <td data-ratio="259 437">59%</td>
+                <td data-ratio="258 437">59%</td>
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@@ -138,7 +138,7 @@ <h2>
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         <p>
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
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diff --git a/docs/coverage/z_10afcb99a7eb7404___init___py.html b/docs/coverage/z_10afcb99a7eb7404___init___py.html
index ff61b94..c49d727 100644
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+++ b/docs/coverage/z_10afcb99a7eb7404___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_10afcb99a7eb7404___main___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
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@@ -96,7 +96,7 @@ <h2>
             <a class="nav" href="z_10afcb99a7eb7404___main___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </footer>
diff --git a/docs/coverage/z_10afcb99a7eb7404___main___py.html b/docs/coverage/z_10afcb99a7eb7404___main___py.html
index 1b5d359..88784ec 100644
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+++ b/docs/coverage/z_10afcb99a7eb7404___main___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_10afcb99a7eb7404_cli_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -92,7 +92,7 @@ <h2>
             <a class="nav" href="z_10afcb99a7eb7404_cli_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
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diff --git a/docs/coverage/z_10afcb99a7eb7404_cli_py.html b/docs/coverage/z_10afcb99a7eb7404_cli_py.html
index 705b221..8a52e5a 100644
--- a/docs/coverage/z_10afcb99a7eb7404_cli_py.html
+++ b/docs/coverage/z_10afcb99a7eb7404_cli_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_10afcb99a7eb7404_client_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -663,7 +663,7 @@ <h2>
             <a class="nav" href="z_10afcb99a7eb7404_client_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </footer>
diff --git a/docs/coverage/z_10afcb99a7eb7404_client_py.html b/docs/coverage/z_10afcb99a7eb7404_client_py.html
index 47da607..dcff0b2 100644
--- a/docs/coverage/z_10afcb99a7eb7404_client_py.html
+++ b/docs/coverage/z_10afcb99a7eb7404_client_py.html
@@ -2,7 +2,7 @@
 <html lang="en">
 <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8">
-    <title>Coverage for pyriandx/client.py: 24%</title>
+    <title>Coverage for pyriandx/client.py: 23%</title>
     <link rel="icon" sizes="32x32" href="favicon_32_cb_c827f16f.png">
     <link rel="stylesheet" href="style_cb_9ff733b0.css" type="text/css">
     <script src="coverage_html_cb_dd2e7eb5.js" defer></script>
@@ -12,7 +12,7 @@
     <div class="content">
         <h1>
             <span class="text">Coverage for </span><b>pyriandx&#8201;/&#8201;client.py</b>:
-            <span class="pc_cov">24%</span>
+            <span class="pc_cov">23%</span>
         </h1>
         <aside id="help_panel_wrapper">
             <input id="help_panel_state" type="checkbox">
@@ -55,8 +55,8 @@ <h1>
         </aside>
         <h2>
             <span class="text">134 statements &nbsp;</span>
-            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">32<span class="text"> run</span></button>
-            <button type="button" class="mis show_mis button_toggle_mis" value="mis" data-shortcut="m" title="Toggle lines missing">102<span class="text"> missing</span></button>
+            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">31<span class="text"> run</span></button>
+            <button type="button" class="mis show_mis button_toggle_mis" value="mis" data-shortcut="m" title="Toggle lines missing">103<span class="text"> missing</span></button>
             <button type="button" class="exc show_exc button_toggle_exc" value="exc" data-shortcut="x" title="Toggle lines excluded">0<span class="text"> excluded</span></button>
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         <p class="text">
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="z_10afcb99a7eb7404_utils_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -87,203 +87,200 @@ <h2>
     <p class="run"><span class="n"><a id="t5" href="#t5">5</a></span><span class="t"><span class="key">import</span> <span class="nam">logging</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t6" href="#t6">6</a></span><span class="t"><span class="key">import</span> <span class="nam">ntpath</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t7" href="#t7">7</a></span><span class="t"><span class="key">import</span> <span class="nam">os</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t8" href="#t8">8</a></span><span class="t"><span class="key">import</span> <span class="nam">shutil</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t9" href="#t9">9</a></span><span class="t"><span class="key">import</span> <span class="nam">time</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t10" href="#t10">10</a></span><span class="t"><span class="key">import</span> <span class="nam">requests</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t8" href="#t8">8</a></span><span class="t"><span class="key">import</span> <span class="nam">time</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t9" href="#t9">9</a></span><span class="t"><span class="key">import</span> <span class="nam">requests</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t10" href="#t10">10</a></span><span class="t"><span class="key">from</span> <span class="nam">importlib</span><span class="op">.</span><span class="nam">resources</span> <span class="key">import</span> <span class="nam">files</span> <span class="key">as</span> <span class="nam">resource_files</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t11" href="#t11">11</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t12" href="#t12">12</a></span><span class="t"><span class="com"># Local imports</span>&nbsp;</span><span class="r"></span></p>
     <p class="run"><span class="n"><a id="t13" href="#t13">13</a></span><span class="t"><span class="key">from</span> <span class="nam">pyriandx</span><span class="op">.</span><span class="nam">utils</span> <span class="key">import</span> <span class="nam">retry_session</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t14" href="#t14">14</a></span><span class="t"><span class="key">from</span> <span class="nam">importlib</span><span class="op">.</span><span class="nam">resources</span> <span class="key">import</span> <span class="nam">files</span> <span class="key">as</span> <span class="nam">resource_files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t15" href="#t15">15</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t16" href="#t16">16</a></span><span class="t"><span class="nam">logger</span> <span class="op">=</span> <span class="nam">logging</span><span class="op">.</span><span class="nam">getLogger</span><span class="op">(</span><span class="nam">__name__</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t17" href="#t17">17</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t18" href="#t18">18</a></span><span class="t"><span class="nam">__all__</span> <span class="op">=</span> <span class="op">[</span><span class="str">'Client'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t14" href="#t14">14</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t15" href="#t15">15</a></span><span class="t"><span class="nam">logger</span> <span class="op">=</span> <span class="nam">logging</span><span class="op">.</span><span class="nam">getLogger</span><span class="op">(</span><span class="nam">__name__</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t16" href="#t16">16</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t17" href="#t17">17</a></span><span class="t"><span class="nam">__all__</span> <span class="op">=</span> <span class="op">[</span><span class="str">'Client'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t18" href="#t18">18</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t19" href="#t19">19</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t20" href="#t20">20</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t21" href="#t21">21</a></span><span class="t"><span class="key">class</span> <span class="nam">Client</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t22" href="#t22">22</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t23" href="#t23">23</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">email</span><span class="op">,</span> <span class="nam">key</span><span class="op">,</span> <span class="nam">institution</span><span class="op">,</span> <span class="nam">base_url</span><span class="op">,</span> <span class="nam">key_is_auth_token</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">=</span> <span class="nam">base_url</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t25" href="#t25">25</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run run2"><span class="n"><a id="t26" href="#t26">26</a></span><span class="t">            <span class="str">'X-Auth-Email'</span><span class="op">:</span> <span class="nam">email</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run run2"><span class="n"><a id="t27" href="#t27">27</a></span><span class="t">            <span class="str">'X-Auth-Institution'</span><span class="op">:</span> <span class="nam">institution</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run run2"><span class="n"><a id="t28" href="#t28">28</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t">        <span class="key">if</span> <span class="nam">key_is_auth_token</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">[</span><span class="str">'X-Auth-Token'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">key</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">[</span><span class="str">'X-Auth-Key'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">key</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t">        <span class="com"># Get path to JSON resource files</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t">        <span class="key">if</span> <span class="nam">resource_files</span> <span class="key">is</span> <span class="key">not</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t">            <span class="com"># Modern approach using importlib.resources</span>&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">data_path</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">resource_files</span><span class="op">(</span><span class="str">'pyriandx'</span><span class="op">)</span><span class="op">.</span><span class="nam">joinpath</span><span class="op">(</span><span class="str">'json'</span><span class="op">)</span><span class="op">)</span> <span class="op">+</span> <span class="str">'/'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t">            <span class="com"># Fallback for Python &lt; 3.9 without importlib_resources</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">data_path</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">join</span><span class="op">(</span><span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">dirname</span><span class="op">(</span><span class="nam">__file__</span><span class="op">)</span><span class="op">,</span> <span class="str">'json'</span><span class="op">)</span> <span class="op">+</span> <span class="str">'/'</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_case</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_data_file</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t">        <span class="str">"""Creates case with given case data file"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">case_data_file</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t">            <span class="nam">request_data</span> <span class="op">=</span> <span class="nam">json</span><span class="op">.</span><span class="nam">load</span><span class="op">(</span><span class="nam">f</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="str">"Creating case with data:"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="nam">request_data</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="str">"/case"</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_sequencer_run</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">accession_number</span><span class="op">,</span> <span class="nam">run_id</span><span class="op">,</span> <span class="nam">request_data</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t">        <span class="str">"""Creates sequencer run with given accession number"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">        <span class="key">if</span> <span class="nam">request_data</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t">            <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">data_path</span> <span class="op">+</span> <span class="str">'create_sequencer_run.json'</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t">                <span class="nam">request_data</span> <span class="op">=</span> <span class="nam">json</span><span class="op">.</span><span class="nam">load</span><span class="op">(</span><span class="nam">f</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'runId'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">run_id</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'specimens'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">accession_number</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating sequencer run with data: </span><span class="op">{</span><span class="nam">request_data</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="str">"/sequencerRun"</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_job</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case</span><span class="op">,</span> <span class="nam">run_id</span><span class="op">,</span> <span class="nam">request_data</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">        <span class="str">"""Creates job with given case and sequence run id"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">        <span class="key">if</span> <span class="nam">request_data</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">            <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">data_path</span> <span class="op">+</span> <span class="str">'create_job.json'</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">                <span class="nam">request_data</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="nam">json</span><span class="op">.</span><span class="nam">load</span><span class="op">(</span><span class="nam">f</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">        <span class="nam">accession_number</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'specimens'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">accession_number</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'sequencerRunInfos'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'runId'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">run_id</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'sequencerRunInfos'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'files'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">case</span><span class="op">[</span><span class="str">'caseFiles'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating job for Case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst"> with input payload:</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="nam">request_data</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">/informaticsJobs</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'jobId'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_job_vcf</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">        <span class="str">"""Creates job with given case id"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating job for vcf with case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">/informaticsJobsVCF</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t20" href="#t20">20</a></span><span class="t"><span class="key">class</span> <span class="nam">Client</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t21" href="#t21">21</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t22" href="#t22">22</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">email</span><span class="op">,</span> <span class="nam">key</span><span class="op">,</span> <span class="nam">institution</span><span class="op">,</span> <span class="nam">base_url</span><span class="op">,</span> <span class="nam">key_is_auth_token</span><span class="op">=</span><span class="key">False</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t23" href="#t23">23</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">=</span> <span class="nam">base_url</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span> <span class="op">=</span> <span class="op">{</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run run2"><span class="n"><a id="t25" href="#t25">25</a></span><span class="t">            <span class="str">'X-Auth-Email'</span><span class="op">:</span> <span class="nam">email</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run run2"><span class="n"><a id="t26" href="#t26">26</a></span><span class="t">            <span class="str">'X-Auth-Institution'</span><span class="op">:</span> <span class="nam">institution</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run run2"><span class="n"><a id="t27" href="#t27">27</a></span><span class="t">        <span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t28" href="#t28">28</a></span><span class="t">        <span class="key">if</span> <span class="nam">key_is_auth_token</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">[</span><span class="str">'X-Auth-Token'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">key</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">[</span><span class="str">'X-Auth-Key'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">key</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">template_root</span> <span class="op">=</span> <span class="nam">resource_files</span><span class="op">(</span><span class="str">'pyriandx'</span><span class="op">)</span><span class="op">.</span><span class="nam">joinpath</span><span class="op">(</span><span class="str">'json'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t">    <span class="key">def</span> <span class="nam">_load_json_template</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">template_name</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t">        <span class="nam">template</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">template_root</span><span class="op">.</span><span class="nam">joinpath</span><span class="op">(</span><span class="nam">template_name</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t">        <span class="key">return</span> <span class="nam">json</span><span class="op">.</span><span class="nam">loads</span><span class="op">(</span><span class="nam">template</span><span class="op">.</span><span class="nam">read_text</span><span class="op">(</span><span class="nam">encoding</span><span class="op">=</span><span class="str">'utf-8'</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_case</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_data_file</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t">        <span class="str">"""Creates case with given case data file"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">case_data_file</span><span class="op">,</span> <span class="str">'r'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t">            <span class="nam">request_data</span> <span class="op">=</span> <span class="nam">json</span><span class="op">.</span><span class="nam">load</span><span class="op">(</span><span class="nam">f</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="str">"Creating case with data:"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="nam">request_data</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="str">"/case"</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_sequencer_run</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">accession_number</span><span class="op">,</span> <span class="nam">run_id</span><span class="op">,</span> <span class="nam">request_data</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t">        <span class="str">"""Creates sequencer run with given accession number"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t">        <span class="key">if</span> <span class="nam">request_data</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t">            <span class="nam">request_data</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_load_json_template</span><span class="op">(</span><span class="str">'create_sequencer_run.json'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'runId'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">run_id</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'specimens'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">accession_number</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating sequencer run with data: </span><span class="op">{</span><span class="nam">request_data</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="str">"/sequencerRun"</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_job</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case</span><span class="op">,</span> <span class="nam">run_id</span><span class="op">,</span> <span class="nam">request_data</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">        <span class="str">"""Creates job with given case and sequence run id"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">        <span class="key">if</span> <span class="nam">request_data</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">            <span class="nam">request_data</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_load_json_template</span><span class="op">(</span><span class="str">'create_job.json'</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">        <span class="nam">accession_number</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'specimens'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'accessionNumber'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">accession_number</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'sequencerRunInfos'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'runId'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">str</span><span class="op">(</span><span class="nam">run_id</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">        <span class="nam">request_data</span><span class="op">[</span><span class="str">'input'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'sequencerRunInfos'</span><span class="op">]</span><span class="op">[</span><span class="num">0</span><span class="op">]</span><span class="op">[</span><span class="str">'files'</span><span class="op">]</span> <span class="op">=</span> <span class="nam">case</span><span class="op">[</span><span class="str">'caseFiles'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating job for Case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst"> with input payload:</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="nam">request_data</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">/informaticsJobs</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">        <span class="nam">response</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">request_data</span><span class="op">)</span><span class="op">.</span><span class="nam">json</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">        <span class="key">return</span> <span class="nam">response</span><span class="op">[</span><span class="str">'jobId'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">    <span class="key">def</span> <span class="nam">create_job_vcf</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">        <span class="str">"""Creates job with given case id"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Creating job for vcf with case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">/informaticsJobsVCF</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_job_status</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">,</span> <span class="nam">job_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">        <span class="str">"""Gets the status of an informatics job."""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Getting status of job </span><span class="op">{</span><span class="nam">job_id</span><span class="op">}</span><span class="fst"> for case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">        <span class="nam">case_info</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">get_case_info</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_job_status</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">,</span> <span class="nam">job_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">        <span class="str">"""Gets the status of an informatics job."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Getting status of job </span><span class="op">{</span><span class="nam">job_id</span><span class="op">}</span><span class="fst"> for case ID: </span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="nam">case_info</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">get_case_info</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">        <span class="nam">job</span> <span class="op">=</span> <span class="key">None</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t">        <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">case_info</span><span class="op">[</span><span class="str">'informaticsJobs'</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">            <span class="key">if</span> <span class="nam">j</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span> <span class="op">==</span> <span class="nam">job_id</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">                <span class="nam">job</span> <span class="op">=</span> <span class="nam">j</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">        <span class="nam">job</span> <span class="op">=</span> <span class="key">None</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">        <span class="key">for</span> <span class="nam">j</span> <span class="key">in</span> <span class="nam">case_info</span><span class="op">[</span><span class="str">'informaticsJobs'</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">            <span class="key">if</span> <span class="nam">j</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span> <span class="op">==</span> <span class="nam">job_id</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">                <span class="nam">job</span> <span class="op">=</span> <span class="nam">j</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">            <span class="nam">status</span> <span class="op">=</span> <span class="nam">job</span><span class="op">[</span><span class="str">'status'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">        <span class="key">except</span> <span class="nam">KeyError</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">            <span class="nam">status</span> <span class="op">=</span> <span class="str">"NO_JOB_AVAILABLE"</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t91" href="#t91">91</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">            <span class="nam">status</span> <span class="op">=</span> <span class="nam">job</span><span class="op">[</span><span class="str">'status'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="key">except</span> <span class="nam">KeyError</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">            <span class="nam">status</span> <span class="op">=</span> <span class="str">"NO_JOB_AVAILABLE"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Got status: </span><span class="op">{</span><span class="nam">status</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">        <span class="key">return</span> <span class="nam">status</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_report</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case</span><span class="op">,</span> <span class="nam">output_dir</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="str">"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t"><span class="str">        Downloads report to output_dir.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t"><span class="str">        If report_index is None, downloads all reports.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t"><span class="str">        If output_dir is None, downloads to working directory.</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">        <span class="key">for</span> <span class="nam">r</span> <span class="key">in</span> <span class="nam">case</span><span class="op">[</span><span class="str">'reports'</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">            <span class="nam">report_id</span> <span class="op">=</span> <span class="nam">r</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">            <span class="nam">local_filename</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">case-</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">_report-</span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">.pdf.gz</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">            <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">/reports/</span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">?format=pdf</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">            <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Got status: </span><span class="op">{</span><span class="nam">status</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">        <span class="key">return</span> <span class="nam">status</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_report</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case</span><span class="op">,</span> <span class="nam">output_dir</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="str">"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t"><span class="str">        Downloads report to output_dir.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t"><span class="str">        If report_index is None, downloads all reports.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t"><span class="str">        If output_dir is None, downloads to working directory.</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t">        <span class="key">for</span> <span class="nam">report</span> <span class="key">in</span> <span class="nam">case</span><span class="op">[</span><span class="str">'reports'</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">            <span class="nam">report_id</span> <span class="op">=</span> <span class="nam">report</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">            <span class="nam">local_filename</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">case-</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">_report-</span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">.pdf.gz</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">            <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case</span><span class="op">[</span><span class="str">'id'</span><span class="op">]</span><span class="op">)</span><span class="op">}</span><span class="fst">/reports/</span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">?format=pdf</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">            <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">            <span class="key">if</span> <span class="nam">output_dir</span> <span class="key">is</span> <span class="key">not</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">makedirs</span><span class="op">(</span><span class="nam">output_dir</span><span class="op">,</span> <span class="nam">exist_ok</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">                <span class="nam">local_filename</span> <span class="op">=</span> <span class="nam">output_dir</span> <span class="op">+</span> <span class="str">"/"</span> <span class="op">+</span> <span class="nam">local_filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">info</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Found report with ID </span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">. Downloading as </span><span class="op">{</span><span class="nam">local_filename</span><span class="op">}</span><span class="fst"> from </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">            <span class="key">if</span> <span class="nam">output_dir</span> <span class="key">is</span> <span class="key">not</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">makedirs</span><span class="op">(</span><span class="nam">output_dir</span><span class="op">,</span> <span class="nam">exist_ok</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">                <span class="nam">local_filename</span> <span class="op">=</span> <span class="nam">output_dir</span> <span class="op">+</span> <span class="str">"/"</span> <span class="op">+</span> <span class="nam">local_filename</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">info</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Found report with ID </span><span class="op">{</span><span class="nam">report_id</span><span class="op">}</span><span class="fst">. Downloading as </span><span class="op">{</span><span class="nam">local_filename</span><span class="op">}</span><span class="fst"> from </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">            <span class="nam">r</span> <span class="op">=</span> <span class="nam">requests</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">stream</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">headers</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">            <span class="key">if</span> <span class="nam">r</span><span class="op">.</span><span class="nam">ok</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">local_filename</span><span class="op">,</span> <span class="str">'wb'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">                    <span class="nam">shutil</span><span class="op">.</span><span class="nam">copyfileobj</span><span class="op">(</span><span class="nam">r</span><span class="op">.</span><span class="nam">raw</span><span class="op">,</span> <span class="nam">f</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Issue downloading file from </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst">. </span><span class="op">{</span><span class="nam">r</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst"> ::: </span><span class="op">{</span><span class="nam">r</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">    <span class="key">def</span> <span class="nam">upload_file</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">filename</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="str">"""Upload file to given accession number"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="nam">files</span> <span class="op">=</span> <span class="op">{</span><span class="str">'file'</span><span class="op">:</span> <span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">,</span> <span class="str">'rb'</span><span class="op">)</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">        <span class="nam">remote_filename</span> <span class="op">=</span> <span class="nam">ntpath</span><span class="op">.</span><span class="nam">basename</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">/caseFiles/</span><span class="op">{</span><span class="nam">remote_filename</span><span class="op">}</span><span class="fst">/</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Upload file to endpoint: </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_case_info</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">        <span class="str">"""Get case info for given case ID"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">    <span class="key">def</span> <span class="nam">list_cases</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">filters</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">        <span class="str">"""List cases, optionally apply query filters if pass-in"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="fst">f"</span><span class="fst">/case</span><span class="fst">"</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">filters</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">    <span class="key">def</span> <span class="nam">get</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="str">"""Expose GET API to caller/client</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t"><span class="str">        Retain _get_api() for backward compatible</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">=</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">params</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">    <span class="key">def</span> <span class="nam">_get_api</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">        <span class="str">"""Internal function to create get requests to the API"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">        <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Sending request to </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">        <span class="nam">t0</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">            <span class="nam">response</span> <span class="op">=</span> <span class="nam">retry_session</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">)</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">params</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="key">except</span> <span class="nam">Exception</span> <span class="key">as</span> <span class="nam">x</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> call failed after retry: </span><span class="op">{</span><span class="nam">x</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">            <span class="key">if</span> <span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span> <span class="op">==</span> <span class="num">200</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> succeeded</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">                <span class="key">return</span> <span class="nam">json</span><span class="op">.</span><span class="nam">loads</span><span class="op">(</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> failed. Error code was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Server responded with </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">        <span class="key">finally</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">            <span class="nam">t1</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call took </span><span class="op">{</span><span class="nam">t1</span> <span class="op">-</span> <span class="nam">t0</span><span class="op">}</span><span class="fst"> seconds</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">    <span class="key">def</span> <span class="nam">post</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="str">"""Expose POST API to caller/client</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t"><span class="str">        Retain _post_api() for backward compatible</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">data</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="run"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">    <span class="key">def</span> <span class="nam">_post_api</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="str">"""Internal function to create post requests to the API"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Sending request to </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">        <span class="nam">t0</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="nam">post_headers</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="key">if</span> <span class="nam">data</span> <span class="key">is</span> <span class="key">not</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">            <span class="nam">post_headers</span><span class="op">[</span><span class="str">'Content-Type'</span><span class="op">]</span> <span class="op">=</span> <span class="str">"application/json"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">            <span class="nam">post_headers</span><span class="op">[</span><span class="str">'Accept-Encoding'</span><span class="op">]</span> <span class="op">=</span> <span class="str">"*"</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">        <span class="key">if</span> <span class="nam">files</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">            <span class="nam">upload</span> <span class="op">=</span> <span class="key">False</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">            <span class="nam">upload</span> <span class="op">=</span> <span class="key">True</span>  <span class="com"># prevents seeing every. single. byte. in file upload during verbose mode</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="com"># uncomment if you like to inspect the json data we're sending</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">        <span class="com"># with open("request-debug.json", "w") as data_file:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="com">#         json.dump(data, data_file, indent=2)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">            <span class="nam">response</span> <span class="op">=</span> <span class="nam">retry_session</span><span class="op">(</span><span class="nam">post_headers</span><span class="op">,</span> <span class="nam">upload</span><span class="op">=</span><span class="nam">upload</span><span class="op">)</span><span class="op">.</span><span class="nam">post</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">json</span><span class="op">=</span><span class="nam">data</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">        <span class="key">except</span> <span class="nam">Exception</span> <span class="key">as</span> <span class="nam">x</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> call failed after retry: </span><span class="op">{</span><span class="nam">x</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">            <span class="key">if</span> <span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span> <span class="op">==</span> <span class="num">200</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> succeeded</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Response was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> failed. Error code was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Server responded with </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">            <span class="key">return</span> <span class="nam">response</span>&nbsp;</span><span class="r"></span></p>
-    <p class="pln"><span class="n"><a id="t202" href="#t202">202</a></span><span class="t">        <span class="key">finally</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t203" href="#t203">203</a></span><span class="t">            <span class="nam">t1</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t204" href="#t204">204</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call took </span><span class="op">{</span><span class="nam">t1</span> <span class="op">-</span> <span class="nam">t0</span><span class="op">}</span><span class="fst"> seconds</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">            <span class="nam">response</span> <span class="op">=</span> <span class="nam">requests</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">stream</span><span class="op">=</span><span class="key">True</span><span class="op">,</span> <span class="nam">headers</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">            <span class="key">if</span> <span class="nam">response</span><span class="op">.</span><span class="nam">ok</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">                <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">local_filename</span><span class="op">,</span> <span class="str">'wb'</span><span class="op">)</span> <span class="key">as</span> <span class="nam">f</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">                    <span class="key">for</span> <span class="nam">chunk</span> <span class="key">in</span> <span class="nam">response</span><span class="op">.</span><span class="nam">iter_content</span><span class="op">(</span><span class="nam">chunk_size</span><span class="op">=</span><span class="num">8192</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">                        <span class="key">if</span> <span class="nam">chunk</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">                            <span class="nam">f</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="nam">chunk</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Issue downloading file from </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst">. </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst"> ::: </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">    <span class="key">def</span> <span class="nam">upload_file</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">filename</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">        <span class="str">"""Upload file to given accession number"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">        <span class="nam">files</span> <span class="op">=</span> <span class="op">{</span><span class="str">'file'</span><span class="op">:</span> <span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">,</span> <span class="str">'rb'</span><span class="op">)</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">        <span class="nam">remote_filename</span> <span class="op">=</span> <span class="nam">ntpath</span><span class="op">.</span><span class="nam">basename</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="nam">endpoint</span> <span class="op">=</span> <span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">/caseFiles/</span><span class="op">{</span><span class="nam">remote_filename</span><span class="op">}</span><span class="fst">/</span><span class="fst">"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Upload file to endpoint: </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_case_info</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">case_id</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="str">"""Get case info for given case ID"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="fst">f"</span><span class="fst">/case/</span><span class="op">{</span><span class="nam">str</span><span class="op">(</span><span class="nam">case_id</span><span class="op">)</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">    <span class="key">def</span> <span class="nam">list_cases</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">filters</span><span class="op">:</span> <span class="nam">dict</span> <span class="op">=</span> <span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">        <span class="str">"""List cases, optionally apply query filters if pass-in"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="fst">f"</span><span class="fst">/case</span><span class="fst">"</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">filters</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">    <span class="key">def</span> <span class="nam">get</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="str">"""Expose GET API to caller/client</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t"><span class="str">        Retain _get_api() for backward compatible</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t142" href="#t142">142</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_get_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">=</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">params</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t143" href="#t143">143</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t144" href="#t144">144</a></span><span class="t">    <span class="key">def</span> <span class="nam">_get_api</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t145" href="#t145">145</a></span><span class="t">        <span class="str">"""Internal function to create get requests to the API"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t146" href="#t146">146</a></span><span class="t">        <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t147" href="#t147">147</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Sending request to </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t148" href="#t148">148</a></span><span class="t">        <span class="nam">t0</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t149" href="#t149">149</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t">            <span class="nam">response</span> <span class="op">=</span> <span class="nam">retry_session</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">)</span><span class="op">.</span><span class="nam">get</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">params</span><span class="op">=</span><span class="nam">params</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">        <span class="key">except</span> <span class="nam">Exception</span> <span class="key">as</span> <span class="nam">x</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> call failed after retry: </span><span class="op">{</span><span class="nam">x</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">            <span class="key">if</span> <span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span> <span class="op">==</span> <span class="num">200</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> succeeded</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="key">return</span> <span class="nam">json</span><span class="op">.</span><span class="nam">loads</span><span class="op">(</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> failed. Error code was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Server responded with </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="key">finally</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">            <span class="nam">t1</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call took </span><span class="op">{</span><span class="nam">t1</span> <span class="op">-</span> <span class="nam">t0</span><span class="op">}</span><span class="fst"> seconds</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">    <span class="key">def</span> <span class="nam">post</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">        <span class="str">"""Expose POST API to caller/client</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t"><span class="str">        Retain _post_api() for backward compatible</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_post_api</span><span class="op">(</span><span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="nam">data</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">    <span class="key">def</span> <span class="nam">_post_api</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">endpoint</span><span class="op">,</span> <span class="nam">data</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="key">None</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">        <span class="str">"""Internal function to create post requests to the API"""</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="nam">url</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">baseURL</span> <span class="op">+</span> <span class="nam">endpoint</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">        <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Sending request to </span><span class="op">{</span><span class="nam">url</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">        <span class="nam">t0</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="nam">post_headers</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">headers</span><span class="op">.</span><span class="nam">copy</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">        <span class="key">if</span> <span class="nam">data</span> <span class="key">is</span> <span class="key">not</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">            <span class="nam">post_headers</span><span class="op">[</span><span class="str">'Content-Type'</span><span class="op">]</span> <span class="op">=</span> <span class="str">"application/json"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">            <span class="nam">post_headers</span><span class="op">[</span><span class="str">'Accept-Encoding'</span><span class="op">]</span> <span class="op">=</span> <span class="str">"*"</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="key">if</span> <span class="nam">files</span> <span class="key">is</span> <span class="key">None</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">            <span class="nam">upload</span> <span class="op">=</span> <span class="key">False</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">            <span class="nam">upload</span> <span class="op">=</span> <span class="key">True</span>  <span class="com"># prevents seeing every. single. byte. in file upload during verbose mode</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">        <span class="com"># uncomment if you like to inspect the json data we're sending</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="com"># with open("request-debug.json", "w") as data_file:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="com">#         json.dump(data, data_file, indent=2)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">        <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">            <span class="nam">response</span> <span class="op">=</span> <span class="nam">retry_session</span><span class="op">(</span><span class="nam">post_headers</span><span class="op">,</span> <span class="nam">upload</span><span class="op">=</span><span class="nam">upload</span><span class="op">)</span><span class="op">.</span><span class="nam">post</span><span class="op">(</span><span class="nam">url</span><span class="op">,</span> <span class="nam">json</span><span class="op">=</span><span class="nam">data</span><span class="op">,</span> <span class="nam">files</span><span class="op">=</span><span class="nam">files</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">        <span class="key">except</span> <span class="nam">Exception</span> <span class="key">as</span> <span class="nam">x</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> call failed after retry: </span><span class="op">{</span><span class="nam">x</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">        <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">            <span class="key">if</span> <span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span> <span class="op">==</span> <span class="num">200</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> succeeded</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Response was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">            <span class="key">else</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call to </span><span class="op">{</span><span class="nam">endpoint</span><span class="op">}</span><span class="fst"> failed. Error code was </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">status_code</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">                <span class="nam">logger</span><span class="op">.</span><span class="nam">critical</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Server responded with </span><span class="op">{</span><span class="nam">response</span><span class="op">.</span><span class="nam">text</span><span class="op">}</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">            <span class="key">return</span> <span class="nam">response</span>&nbsp;</span><span class="r"></span></p>
+    <p class="pln"><span class="n"><a id="t199" href="#t199">199</a></span><span class="t">        <span class="key">finally</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t200" href="#t200">200</a></span><span class="t">            <span class="nam">t1</span> <span class="op">=</span> <span class="nam">time</span><span class="op">.</span><span class="nam">time</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="mis show_mis"><span class="n"><a id="t201" href="#t201">201</a></span><span class="t">            <span class="nam">logger</span><span class="op">.</span><span class="nam">debug</span><span class="op">(</span><span class="fst">f"</span><span class="fst">Call took </span><span class="op">{</span><span class="nam">t1</span> <span class="op">-</span> <span class="nam">t0</span><span class="op">}</span><span class="fst"> seconds</span><span class="fst">"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
 </main>
 <footer>
     <div class="content">
@@ -293,7 +290,7 @@ <h2>
             <a class="nav" href="z_10afcb99a7eb7404_utils_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </footer>
diff --git a/docs/coverage/z_10afcb99a7eb7404_utils_py.html b/docs/coverage/z_10afcb99a7eb7404_utils_py.html
index 72eb7b7..880e347 100644
--- a/docs/coverage/z_10afcb99a7eb7404_utils_py.html
+++ b/docs/coverage/z_10afcb99a7eb7404_utils_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="index.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"></button>
@@ -121,7 +121,7 @@ <h2>
             <a class="nav" href="index.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.13.4">coverage.py v7.13.4</a>,
-            created at 2026-03-04 16:33 +1100
+            created at 2026-03-05 14:38 +1100
         </p>
     </div>
 </footer>
diff --git a/docs/developer.html b/docs/developer.html
index ddd797e..9121047 100644
--- a/docs/developer.html
+++ b/docs/developer.html
@@ -7,7 +7,8 @@
 
     <title>DEVELOPER GUIDE &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
@@ -109,7 +110,16 @@ <h1 class="logo"><a href="index.html">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
+<search id="searchbox" style="display: none" role="search">
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false" placeholder="Search"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
 <li class="toctree-l1"><a class="reference internal" href="user.html">USER GUIDE</a></li>
@@ -131,16 +141,6 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<search id="searchbox" style="display: none" role="search">
-  <h3 id="searchlabel">Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
-      <input type="submit" value="Go" />
-    </form>
-    </div>
-</search>
-<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -158,7 +158,7 @@ <h3 id="searchlabel">Quick search</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
       |
       <a href="_sources/developer.rst.txt"
diff --git a/docs/genindex.html b/docs/genindex.html
index 169ed67..934b5fa 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -6,7 +6,8 @@
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>Index &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
@@ -52,7 +53,16 @@ <h1 class="logo"><a href="index.html">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
+<search id="searchbox" style="display: none" role="search">
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false" placeholder="Search"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="user.html">USER GUIDE</a></li>
@@ -67,16 +77,6 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<search id="searchbox" style="display: none" role="search">
-  <h3 id="searchlabel">Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
-      <input type="submit" value="Go" />
-    </form>
-    </div>
-</search>
-<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -94,7 +94,7 @@ <h3 id="searchlabel">Quick search</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
     </div>
 
diff --git a/docs/index.html b/docs/index.html
index e55c82b..4ef0b77 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -7,7 +7,8 @@
 
     <title>Welcome to pyriandx’s documentation! &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
@@ -108,8 +109,9 @@ <h2>License<a class="headerlink" href="#license" title="Link to this heading">¶
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="changelog.html">CHANGE LOG</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="changelog.html#id1">0.3.0</a></li>
-<li class="toctree-l2"><a class="reference internal" href="changelog.html#id2">0.2.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="changelog.html#id1">0.4.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="changelog.html#id2">0.3.0</a></li>
+<li class="toctree-l2"><a class="reference internal" href="changelog.html#id3">0.2.0</a></li>
 </ul>
 </li>
 </ul>
@@ -141,7 +143,16 @@ <h1 class="logo"><a href="#">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
+<search id="searchbox" style="display: none" role="search">
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false" placeholder="Search"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="user.html">USER GUIDE</a></li>
@@ -157,16 +168,6 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<search id="searchbox" style="display: none" role="search">
-  <h3 id="searchlabel">Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
-      <input type="submit" value="Go" />
-    </form>
-    </div>
-</search>
-<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -184,7 +185,7 @@ <h3 id="searchlabel">Quick search</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
       |
       <a href="_sources/index.rst.txt"
diff --git a/docs/main.html b/docs/main.html
index 6293faa..d917c22 100644
--- a/docs/main.html
+++ b/docs/main.html
@@ -7,7 +7,8 @@
 
     <title>pyriandx &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
     <script src="_static/sphinx_highlight.js?v=6ffebe34"></script>
@@ -97,7 +98,16 @@ <h1 class="logo"><a href="index.html">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
+<search id="searchbox" style="display: none" role="search">
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false" placeholder="Search"/>
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="user.html">USER GUIDE</a></li>
@@ -112,16 +122,6 @@ <h3>Related Topics</h3>
   </ul></li>
 </ul>
 </div>
-<search id="searchbox" style="display: none" role="search">
-  <h3 id="searchlabel">Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" aria-labelledby="searchlabel" autocomplete="off" autocorrect="off" autocapitalize="off" spellcheck="false"/>
-      <input type="submit" value="Go" />
-    </form>
-    </div>
-</search>
-<script>document.getElementById('searchbox').style.display = "block"</script>
 
 
 
@@ -139,7 +139,7 @@ <h3 id="searchlabel">Quick search</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
       |
       <a href="_sources/main.rst.txt"
diff --git a/docs/pyriandx/client.html b/docs/pyriandx/client.html
index 21eaf51..5c55b7f 100644
--- a/docs/pyriandx/client.html
+++ b/docs/pyriandx/client.html
@@ -67,13 +67,11 @@ <h2 class="section-title" id="header-classes">Classes</h2>
             self.headers[&#39;X-Auth-Token&#39;] = key
         else:
             self.headers[&#39;X-Auth-Key&#39;] = key
-        # Get path to JSON resource files
-        if resource_files is not None:
-            # Modern approach using importlib.resources
-            self.data_path = str(resource_files(&#39;pyriandx&#39;).joinpath(&#39;json&#39;)) + &#39;/&#39;
-        else:
-            # Fallback for Python &lt; 3.9 without importlib_resources
-            self.data_path = os.path.join(os.path.dirname(__file__), &#39;json&#39;) + &#39;/&#39;
+        self.template_root = resource_files(&#39;pyriandx&#39;).joinpath(&#39;json&#39;)
+
+    def _load_json_template(self, template_name):
+        template = self.template_root.joinpath(template_name)
+        return json.loads(template.read_text(encoding=&#39;utf-8&#39;))
 
     def create_case(self, case_data_file):
         &#34;&#34;&#34;Creates case with given case data file&#34;&#34;&#34;
@@ -87,8 +85,7 @@ <h2 class="section-title" id="header-classes">Classes</h2>
     def create_sequencer_run(self, accession_number, run_id, request_data=None):
         &#34;&#34;&#34;Creates sequencer run with given accession number&#34;&#34;&#34;
         if request_data is None:
-            with open(self.data_path + &#39;create_sequencer_run.json&#39;, &#39;r&#39;) as f:
-                request_data = json.load(f)
+            request_data = self._load_json_template(&#39;create_sequencer_run.json&#39;)
         request_data[&#39;runId&#39;] = run_id
         request_data[&#39;specimens&#39;][0][&#39;accessionNumber&#39;] = accession_number
         logger.debug(f&#34;Creating sequencer run with data: {request_data}&#34;)
@@ -98,8 +95,7 @@ <h2 class="section-title" id="header-classes">Classes</h2>
     def create_job(self, case, run_id, request_data=None):
         &#34;&#34;&#34;Creates job with given case and sequence run id&#34;&#34;&#34;
         if request_data is None:
-            with open(self.data_path + &#39;create_job.json&#39;, &#39;r&#39;) as f:
-                request_data: dict = json.load(f)
+            request_data = self._load_json_template(&#39;create_job.json&#39;)
         accession_number = str(case[&#39;specimens&#39;][0][&#39;accessionNumber&#39;])
         request_data[&#39;input&#39;][0][&#39;accessionNumber&#39;] = str(accession_number)
         request_data[&#39;input&#39;][0][&#39;sequencerRunInfos&#39;][0][&#39;runId&#39;] = str(run_id)
@@ -141,8 +137,8 @@ <h2 class="section-title" id="header-classes">Classes</h2>
         If report_index is None, downloads all reports.
         If output_dir is None, downloads to working directory.
         &#34;&#34;&#34;
-        for r in case[&#39;reports&#39;]:
-            report_id = r[&#39;id&#39;]
+        for report in case[&#39;reports&#39;]:
+            report_id = report[&#39;id&#39;]
             local_filename = f&#34;case-{str(case[&#39;id&#39;])}_report-{report_id}.pdf.gz&#34;
             endpoint = f&#34;/case/{str(case[&#39;id&#39;])}/reports/{report_id}?format=pdf&#34;
             url = self.baseURL + endpoint
@@ -152,12 +148,14 @@ <h2 class="section-title" id="header-classes">Classes</h2>
                 local_filename = output_dir + &#34;/&#34; + local_filename
             logger.info(f&#34;Found report with ID {report_id}. Downloading as {local_filename} from {url}&#34;)
 
-            r = requests.get(url, stream=True, headers=self.headers)
-            if r.ok:
+            response = requests.get(url, stream=True, headers=self.headers)
+            if response.ok:
                 with open(local_filename, &#39;wb&#39;) as f:
-                    shutil.copyfileobj(r.raw, f)
+                    for chunk in response.iter_content(chunk_size=8192):
+                        if chunk:
+                            f.write(chunk)
             else:
-                logger.critical(f&#34;Issue downloading file from {endpoint}. {r.status_code} ::: {r.text}&#34;)
+                logger.critical(f&#34;Issue downloading file from {endpoint}. {response.status_code} ::: {response.text}&#34;)
 
     def upload_file(self, filename, case_id):
         &#34;&#34;&#34;Upload file to given accession number&#34;&#34;&#34;
@@ -273,8 +271,7 @@ <h3>Methods</h3>
 <pre><code class="python">def create_job(self, case, run_id, request_data=None):
     &#34;&#34;&#34;Creates job with given case and sequence run id&#34;&#34;&#34;
     if request_data is None:
-        with open(self.data_path + &#39;create_job.json&#39;, &#39;r&#39;) as f:
-            request_data: dict = json.load(f)
+        request_data = self._load_json_template(&#39;create_job.json&#39;)
     accession_number = str(case[&#39;specimens&#39;][0][&#39;accessionNumber&#39;])
     request_data[&#39;input&#39;][0][&#39;accessionNumber&#39;] = str(accession_number)
     request_data[&#39;input&#39;][0][&#39;sequencerRunInfos&#39;][0][&#39;runId&#39;] = str(run_id)
@@ -314,8 +311,7 @@ <h3>Methods</h3>
 <pre><code class="python">def create_sequencer_run(self, accession_number, run_id, request_data=None):
     &#34;&#34;&#34;Creates sequencer run with given accession number&#34;&#34;&#34;
     if request_data is None:
-        with open(self.data_path + &#39;create_sequencer_run.json&#39;, &#39;r&#39;) as f:
-            request_data = json.load(f)
+        request_data = self._load_json_template(&#39;create_sequencer_run.json&#39;)
     request_data[&#39;runId&#39;] = run_id
     request_data[&#39;specimens&#39;][0][&#39;accessionNumber&#39;] = accession_number
     logger.debug(f&#34;Creating sequencer run with data: {request_data}&#34;)
@@ -398,8 +394,8 @@ <h3>Methods</h3>
     If report_index is None, downloads all reports.
     If output_dir is None, downloads to working directory.
     &#34;&#34;&#34;
-    for r in case[&#39;reports&#39;]:
-        report_id = r[&#39;id&#39;]
+    for report in case[&#39;reports&#39;]:
+        report_id = report[&#39;id&#39;]
         local_filename = f&#34;case-{str(case[&#39;id&#39;])}_report-{report_id}.pdf.gz&#34;
         endpoint = f&#34;/case/{str(case[&#39;id&#39;])}/reports/{report_id}?format=pdf&#34;
         url = self.baseURL + endpoint
@@ -409,12 +405,14 @@ <h3>Methods</h3>
             local_filename = output_dir + &#34;/&#34; + local_filename
         logger.info(f&#34;Found report with ID {report_id}. Downloading as {local_filename} from {url}&#34;)
 
-        r = requests.get(url, stream=True, headers=self.headers)
-        if r.ok:
+        response = requests.get(url, stream=True, headers=self.headers)
+        if response.ok:
             with open(local_filename, &#39;wb&#39;) as f:
-                shutil.copyfileobj(r.raw, f)
+                for chunk in response.iter_content(chunk_size=8192):
+                    if chunk:
+                        f.write(chunk)
         else:
-            logger.critical(f&#34;Issue downloading file from {endpoint}. {r.status_code} ::: {r.text}&#34;)</code></pre>
+            logger.critical(f&#34;Issue downloading file from {endpoint}. {response.status_code} ::: {response.text}&#34;)</code></pre>
 </details>
 <div class="desc"><p>Downloads report to output_dir.
 If report_index is None, downloads all reports.
diff --git a/docs/search.html b/docs/search.html
index ea0d7f7..6802eec 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -6,7 +6,8 @@
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>Search &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
+    <link rel="stylesheet" type="text/css" href="_static/basic.css?v=b08954a9" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=27fed22d" />
     
     <script src="_static/documentation_options.js?v=6c02275b"></script>
     <script src="_static/doctools.js?v=fd6eb6e6"></script>
@@ -111,7 +112,7 @@ <h3>Related Topics</h3>
       
       |
       Powered by <a href="https://www.sphinx-doc.org/">Sphinx 9.1.0</a>
-      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 0.7.16</a>
+      &amp; <a href="https://alabaster.readthedocs.io">Alabaster 1.0.0</a>
       
     </div>
 
diff --git a/docs/searchindex.js b/docs/searchindex.js
index e505684..2ccb2ef 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
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diff --git a/docs/user.html b/docs/user.html
index 48ad48b..062751d 100644
--- a/docs/user.html
+++ b/docs/user.html
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     <title>USER GUIDE &#8212; pyriandx 0.4.0 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=5ecbeea2" />
-    <link rel="stylesheet" type="text/css" href="_static/alabaster.css?v=12dfc556" />
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@@ -305,7 +306,16 @@ <h1 class="logo"><a href="index.html">pyriandx</a></h1>
 
 
 
-<h3>Navigation</h3>
+
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+    <div class="searchformwrapper">
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+      <input type="submit" value="Go" />
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+    </div>
+</search>
+<script>document.getElementById('searchbox').style.display = "block"</script><h3>Navigation</h3>
 <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
 <ul class="current">
 <li class="toctree-l1 current"><a class="current reference internal" href="#">USER GUIDE</a><ul>
@@ -337,16 +347,6 @@ <h3>Related Topics</h3>
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