Merge pull request #33 from stonerlab/copilot/modify-imagearray-as-de… #350
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| name: pytest | |
| on: push | |
| jobs: | |
| run_pytest: | |
| name: run-tests (${{ matrix.python-version }}, ${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| permissions: | |
| contents: read | |
| checks: write | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11", "3.12","3.13", "3.14"] | |
| os: ["ubuntu-latest"] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.3.1 | |
| - name: Install Mamba environment | |
| uses: mamba-org/setup-micromamba@add3a49764cedee8ee24e82dfde87f5bc2914462 # v2.0.7 | |
| with: | |
| environment-file: tests/test-env.yml | |
| environment-name: test-environment | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| --channel-priority flexible | |
| init-shell: bash | |
| cache-downloads: true | |
| cache-environment: true | |
| - name: Mamba information | |
| run: | | |
| micromamba info | |
| micromamba list | |
| - name: install package | |
| run: pip install --no-deps . | |
| - name: Install headless server | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install xvfb | |
| sudo apt-get install qtbase5-dev | |
| - name: Test with xvfb | |
| run: | | |
| xvfb-run --auto-servernum pytest -n 2 --cov-report= --cov=Stoner --junitxml pytest.xml | |
| coverage xml | |
| env: | |
| TZ: Europe/London | |
| LC_CTYPE: en_GB.UTF-8 | |
| GH_ACTION: True | |
| - name: Cleanup X11 server | |
| uses: bcomnes/cleanup-xvfb@9e016c43bb8d73fe7d5933d2ef00fd770c1a7c50 # v1.0.9 | |
| - name: Coveralls Parallel | |
| uses: coverallsapp/github-action@5cbfd81b66ca5d10c19b062c04de0199c215fb6e # v2.3.7 | |
| with: | |
| flag-name: run-${{ join(matrix.*, '-') }} | |
| format: cobertura | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload Unit Test Results | |
| if: always() | |
| uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2 | |
| with: | |
| name: Unit Test Results (Python ${{ matrix.python-version }}) | |
| path: pytest.xml | |
| - name: Post Coveraage result to Codacy | |
| run: | | |
| export CODACY_PROJECT_TOKEN=${{ secrets.CODACY_PROJECT_TOKEN }} | |
| bash <(curl -Ls https://coverage.codacy.com/get.sh) report -r coverage.xml | |
| publish-test-results: | |
| name: "Publish Unit Tests Results" | |
| needs: run_pytest | |
| runs-on: ubuntu-latest | |
| if: always() | |
| permissions: | |
| checks: write | |
| pull-requests: write | |
| steps: | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0 | |
| with: | |
| path: artifacts | |
| - name: Publish Unit Test Results | |
| uses: EnricoMi/publish-unit-test-result-action@c950f6fb443cb5af20a377fd0dfaa78838901040 # v2.23.0 | |
| with: | |
| files: artifacts/**/*.xml | |
| coverage-finish: | |
| needs: run_pytest | |
| runs-on: ubuntu-latest | |
| permissions: | |
| checks: write | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@5cbfd81b66ca5d10c19b062c04de0199c215fb6e # v2.3.7 | |
| with: | |
| parallel-finished: true | |
| carryforward: "run-1,run-2" |