Dear Drs. Johannes Söding and Martin Steinegger,
My name is Basudev Ghoshal. I am a Molecular Plant Virologist. My lab studies viruses that infect small fruit crops, fruit trees, and grapevines to develop diagnostics tools, antiviral strategies for crop treatments, and improved varieties of crops. We use both wet lab and bioinformatics tools for our research.
We are currently in the process of examining a virome and are using mmseqs2. We are finding that your mmseqs2 is a great tool for our work. I would like to thank you for developing such a useful tool. For my research work, I am using the currently available databases that you have hosted on your github page. In addition to the available databases, I would like to use the RVDB for my work (https://rvdb-prot.pasteur.fr/). However, I am not able to generate a mmseqs usable seqdb and seqtaxdb. I would appreciate if you can generate a mmseqs usable RVDB protein database.
Thank you very much!
Best regards,
Basudev
Dear Drs. Johannes Söding and Martin Steinegger,
My name is Basudev Ghoshal. I am a Molecular Plant Virologist. My lab studies viruses that infect small fruit crops, fruit trees, and grapevines to develop diagnostics tools, antiviral strategies for crop treatments, and improved varieties of crops. We use both wet lab and bioinformatics tools for our research.
We are currently in the process of examining a virome and are using mmseqs2. We are finding that your mmseqs2 is a great tool for our work. I would like to thank you for developing such a useful tool. For my research work, I am using the currently available databases that you have hosted on your github page. In addition to the available databases, I would like to use the RVDB for my work (https://rvdb-prot.pasteur.fr/). However, I am not able to generate a mmseqs usable seqdb and seqtaxdb. I would appreciate if you can generate a mmseqs usable RVDB protein database.
Thank you very much!
Best regards,
Basudev