Blog post from Luca and Mike

Author: gustavdelius

_posts/2025-04-02-age-in-mizer/age-in-mizer.Rmd

@@ -0,0 +1,129 @@
+@book{Andersen_book,
+  author    = {Ken H. Andersen},
+  title     = {Fish Ecology, Evolution, and Exploitation: A New Theoretical Synthesis},
+  year      = {2019},
+  publisher = {Princeton University Press}
+}
+
+@article{blanchard,
+  author    = {Julia L. Blanchard and Ken H. Andersen and Finlay Scott and Niels T. Hintzen and Gerjan Piet and Simon Jennings},
+  title     = {Evaluating Targets and Trade-Offs Among Fisheries and Conservation Objectives Using a Multispecies Size Spectrum Model},
+  journal   = {Journal of Applied Ecology},
+  volume    = {51},
+  number    = {3},
+  pages     = {612--622},
+  year      = {2014},
+  doi       = {10.1111/1365-2664.12238}
+}
+
+@article{hartvig,
+  author    = {Martin Hartvig and Ken H. Andersen and Jan E. Beyer},
+  title     = {Food Web Framework for Size-Structured Populations},
+  journal   = {Journal of Theoretical Biology},
+  volume    = {272},
+  number    = {1},
+  pages     = {113--122},
+  year      = {2011},
+  doi       = {10.1016/j.jtbi.2010.12.006}
+}
+
+@techreport{ICES2024,
+  author    = {{ICES}},
+  title     = {Working Group on Multispecies Assessment Methods (WGSAM; outputs from 2023 meeting)},
+  year      = {2024},
+  month     = {January},
+  doi       = {10.17895/ices.pub.25020968.v3}
+}
+
+@techreport{sms,
+  author    = {Peter Lewy and Morten Vinther},
+  title     = {A Stochastic Age-Length-Structured Multispecies Model Applied to North Sea Stocks},
+  year      = {2004},
+  institution = {ICES}
+}
+
+@article{sam,
+  author    = {Anders Nielsen and Casper W. Berg},
+  title     = {Estimation of Time-Varying Selectivity in Stock Assessments Using State-Space Models},
+  journal   = {Fisheries Research},
+  volume    = {158},
+  pages     = {96--101},
+  year      = {2014},
+  doi       = {10.1016/j.fishres.2014.01.014}
+}
+
+@article{punt_MSE,
+  author    = {Andre E. Punt and Doug S. Butterworth and Carryn L. de Moor and Jos{\'e} A. A. De Oliveira and Malcolm Haddon},
+  title     = {Management Strategy Evaluation: Best Practices},
+  journal   = {Fish and Fisheries},
+  volume    = {17},
+  number    = {2},
+  pages     = {303--334},
+  year      = {2016},
+  doi       = {10.1111/faf.12104}
+}
+
+@article{mizer,
+  author    = {Finlay Scott and Julia L. Blanchard and Ken H. Andersen},
+  title     = {Mizer: An R Package for Multispecies, Trait-Based and Community Size Spectrum Ecological Modelling},
+  journal   = {Methods in Ecology and Evolution},
+  volume    = {5},
+  number    = {10},
+  pages     = {1121--1125},
+  year      = {2014},
+  doi       = {10.1111/2041-210X.12256}
+}
+
+@article{spence_ns,
+  author    = {Michael A. Spence and Paul G. Blackwell and Julia L. Blanchard},
+  title     = {Parameter Uncertainty of a Dynamic Multispecies Size Spectrum Model},
+  journal   = {Canadian Journal of Fisheries and Aquatic Sciences},
+  volume    = {73},
+  number    = {4},
+  pages     = {589--597},
+  year      = {2016},
+  doi       = {10.1139/cjfas-2015-0022}
+}
+
+@article{spence_prec,
+  author    = {Michael A. Spence and James A. Martindale and Khatija Alliji and Hayley J. Bannister and Robert B. Thorpe and Nicola D. Walker and Peter J. Mitchell and Matthew R. Kerr and Paul J. Dolder},
+  title     = {Assessing the Effect of Multispecies Interactions on Precautionary Reference Points Using an Ensemble Modelling Approach: A North Sea Case Study},
+  journal   = {Fisheries Research},
+  volume    = {280},
+  pages     = {107160},
+  year      = {2024},
+  doi       = {10.1016/j.fishres.2024.107160}
+}
+
+@article{spence_cs,
+  author    = {Michael A. Spence and Robert B. Thorpe and Paul G. Blackwell and Finlay Scott and Richard Southwell and Julia L. Blanchard},
+  title     = {Quantifying Uncertainty and Dynamical Changes in Multi-Species Fishing Mortality Rates, Catches and Biomass by Combining State-Space and Size-Based Multi-Species Models},
+  journal   = {Fish and Fisheries},
+  volume    = {22},
+  number    = {4},
+  pages     = {667--681},
+  year      = {2021},
+  doi       = {10.1111/faf.12543}
+}
+
+@article{Trijoulet_19,
+  author    = {Vanessa Trijoulet and Gavin Fay and Kiersten L. Curti and Brian Smith and Timothy J. Miller},
+  title     = {Performance of Multispecies Assessment Models: Insights on the Influence of Diet Data},
+  journal   = {ICES Journal of Marine Science},
+  volume    = {76},
+  number    = {6},
+  pages     = {1464--1476},
+  year      = {2019},
+  doi       = {10.1093/icesjms/fsz053}
+}
+
+@article{Trijoulet_20,
+  author    = {Vanessa Trijoulet and Gavin Fay and Timothy J. Miller},
+  title     = {Performance of a State-Space Multispecies Model: What Are the Consequences of Ignoring Predation and Process Errors in Stock Assessments?},
+  journal   = {Journal of Applied Ecology},
+  volume    = {57},
+  number    = {1},
+  pages     = {121--135},
+  year      = {2020},
+  doi       = {10.1111/1365-2664.13515}
+}