blacked

Author: EveCharbie

biobuddy/components/real/model_dynamics.py

@@ -360,9 +360,7 @@ def inverse_kinematics(
                 viz_scaled_model.options.show_gravity = True
                 viz_scaled_model.options.show_marker_labels = False
                 viz_scaled_model.options.show_center_of_mass_labels = False
-                viz.add_animated_model(
-                    viz_scaled_model, optimal_q, tracked_markers=pyomarkers
-                )
+                viz.add_animated_model(viz_scaled_model, optimal_q, tracked_markers=pyomarkers)
                 viz.rerun_by_frame("Model output")
 
         return optimal_q

biobuddy/model_modifiers/joint_center_tool.py

@@ -118,7 +118,9 @@ def _check_c3d_functional_trial_file(self):
         for marker_name in self.parent_marker_names + self.child_marker_names:
             std += self.c3d_data.std_marker_position(marker_name)
         if len(std) == 0:
-            raise RuntimeError(f"There are no markers in the current functional trial setup. Please review the `parent_marker_names` and `child_marker_names`.")
+            raise RuntimeError(
+                f"There are no markers in the current functional trial setup. Please review the `parent_marker_names` and `child_marker_names`."
+            )
         if all(np.array(std) < 0.01):
             raise RuntimeError(
                 f"The markers {self.parent_marker_names + self.child_marker_names} are not moving in the functional trial (markers std = {std}). "

biobuddy/model_modifiers/scale_tool.py

@@ -602,7 +602,9 @@ def find_static_pose(
 
             model_marker_names = model_to_use.marker_names
             marker_indices = [experimental_marker_names.index(m) for m in model_marker_names]
-            pyomarkers = pyorerun.Pyomarkers(data=marker_positions[:, marker_indices, :], channels=model_marker_names, show_labels=False)
+            pyomarkers = pyorerun.Pyomarkers(
+                data=marker_positions[:, marker_indices, :], channels=model_marker_names, show_labels=False
+            )
             viz.add_xp_markers(name=experimental_marker_names, markers=pyomarkers, show_tracked_marker_labels=False)
             viz.rerun_by_frame("Model output")
 

examples/replace_joint_centers_functionally.py

@@ -167,7 +167,9 @@ def main(visualization):
         # Add the experimental markers from the static trial
         static_exp_markers = C3dData(static_filepath, first_frame=500, last_frame=510)
         static_marker_positions = static_exp_markers.get_position(scaled_model.marker_names)
-        pyomarkers = pyorerun.Pyomarkers(data=static_marker_positions, channels=scaled_model.marker_names, show_labels=False)
+        pyomarkers = pyorerun.Pyomarkers(
+            data=static_marker_positions, channels=scaled_model.marker_names, show_labels=False
+        )
 
         # SCoRE model
         viz_scaled_model = pyorerun.BiorbdModel(score_biomod_filepath)

tests/test_scaling.py

@@ -15,6 +15,7 @@
 from test_utils import remove_temporary_biomods
 from biobuddy import BiomechanicalModelReal, MuscleType, MuscleStateType, ScaleTool, C3dData
 
+
 def convert_c3d_to_trc(c3d_filepath):
     """
     This function reads the c3d static file and converts it into a trc file that will be used to scale the model in OpenSim.