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AcentraleData.txt
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111 lines (105 loc) · 5.64 KB
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Published:
Characterization of Anaplasma marginale subspecies centrale strains using msp1aS genotyping reveals a wildlife reservoir.
Khumalo ZT, Catanese HN, Liesching N, Hove P, Collins NE, Chaisi ME, Gebremedhin AH, Oosthuizen MC, Brayton KA.
J Clin Microbiol. 2016 Jul 20. pii: JCM.01029-16.
Repeats:
Ac1 : qpsaqqgasvetstqasvsgdvdsswtalggpsfsapvvdsgiqsss
Ac2 : qpsaqqgasvetstqasvsgdvdsswaalggpsfsapvvdsgiqsss
Ac3 : qpsaqqgagveasaqasvsginsswgalggpsfsapvvgsgiqps
Ac4 : qpsaqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgtqps
Ac5 : qpsaqqgtgveassgqssvstpvsginsswgalggpsfsapvvgsgiqps
Ac6 : qpsaqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgiqps
Ac7 : qpgaqqgagvetstqasvsginsswgalggpsfsapvvgsgiqsss
Ac8 : qpgaqqgagvetstqasvsginsswgalggpsfsapvvgsgiqps
Ac9 : qpgaqqgagvetstqasvsginsswgalggpsfsvpvvgsgiqsss
Ac10 : qpsaqqgvgtsgtqasvsvcvdsswgalggpsfsapvvdsgiqps
Ac11 : qpgaqqgagvetstqasvsgidsswgalggpsfsapvvgsgiqsss
Ac12 : qpsaqqgasvetstqasvsggvdsswtalggpsfsapvvdsgiqss
Ac13 : qpsaqqgasvetstqasvsggvdsswtalggpsfsapvvdsdsqss
Ac14 : qpsaqqgasvetstrasvsgdvdsswaalggpsfsapvvdsgiqsss
Ac15 : qpsaqqgasvetstpasvsgdvdsswaafggpsfsapvvdsgiqsss
Ac16 : qpsaqqgasvetstrasvsgdvdsswaafggpsfsapvvdsgiqsss
Ac17 : qpgaqqgtgveasaqasvsginsswgalggpsfsapvvgsgiqsss
Ac18 : qpstqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgiqsss
Ac19 : qpsaqqgaggetstqdsvsginsswgalggpsfsapvvgsgiqsss
Ac20 : qpsaqqgvgtsgtqasvsggvgsswgalggpsfsapvvdfgiqsss
Ac21 : qpsaqqgvgtsgtqasvsvcvdsswgalggpsfsapvvdfgiqsss
Ac22 : qpsaqqgasvetstqasvsgdvdsswaalggpsfsapvvdsgiqps
Ac23 : qpgaqqsagvetstqasvsggvdsswgslggasfsapvvgsgiqssg
Ac24 : qpgaqqgtgvetssgqssvstpvsginsswgalggpsfsapvigsgiqssg
Ac25 : qpgaqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgiqssg
Ac26 : qpsaqqgasvetstrasvsgdvdsswtalggpsfsapvvdsgiqsss
Ac27 : qpsaqqgasvetstqasvsggvdsswgalggpsfsapvvdsdsqss
Ac28 : qpsaqqcasvetstqasvsgdvdsswaalggpsfsapvvdsgiqsss
Ac29 : qpgaqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgiqps
Ac30 : qpgaqqgagvgtstqasvsggvdsswgslggasfsapvvgsgiqssg
Ac31 : qpgaqqgagvetstqasvsginsswgalggpsfsalvvgsgiqsss
Ac32 : qpsaqqgvgtsgtqasvsvgvdsswgalggpsfsapvvdfgiqsss
Ac33 : qpsaqqgtgvetssgqssvstpvsginsswgalggpsfsapvvgsgiqsss
Ac34 : qpgaqqgtgvetstqasvsggvdsswgslggaafsvvgssqvgsqss
Ac35 : qpsaqqgtgvetsaqasvsggvdsswgalggaafsvvgssqvgsqssv
Ac36T : stpvsginsswgalggpsfsapvvgsgiqps
Ac37T : qpstpvsginsswgalggpsfsapvvgsgiqps
Ac38 : qpstqqgtgvetstqasvsggvdsswgslggaafsvvgssqvgsqssv
Ac39T : stpvsginsswgalggpsfsvplvgsgiqssg
Ac40T : stpvsginsswgalggpsfsapvvgsgiqssg
Ac41T : stpvsginsswgalggpsfsapvigsgiqssg
Ac42 : qpgaqqsagvetstqasvsggvdsswgslggaafsvvgssqvgsqssv
Ac43 : qpgaqqgtgveasaqasvsginsswgalggpsfsapvvgsgiqps
Ac44T : stpvsginsswgalggpsfsaplvgsgiqssg
Ac45 : qpgaqqgagvetstqasvsggvdsswgslggaafsvvgssqvgsqssv
Ac46T : stpvsginsswgalggpsfsapvvgsgiqsss
Ac47 : qpgaqqgagvetstqasvsggvdsswgalggpsfsapvvgsgiqps
Strains:
Vaccine : Ac1 Ac1 Ac1 Ac2 : South Africa, Guateng
2014 , CNP986 : Ac11 Ac8 : -32.25,24.5
2014 , CNP986 : Ac9 Ac8 : -32.25,24.5
2014 , CNP986 : Ac11 Ac11 Ac11 Ac11 Ac8 : -32.25,24.5
2014 , CNP987 : Ac3 Ac4 Ac5 Ac6 : -32.25,24.5
2014 , CNP979 : Ac7 Ac8 : -32.25,24.5
2014 , HiP6 : Ac1 Ac1 Ac1 Ac2 : -28.21983,31.95187
2014 , HiP6 : Ac30 Ac24 Ac25 : -28.21983,31.95187
2014 , HiP6 : Ac29 Ac29 Ac29 : -28.21983,31.95187
2014 , HiP6 : Ac33 Ac3 Ac6 : -28.21983,31.95187
2014 , MNP999 : Ac6 Ac35 Ac36T Ac37T Ac6 : -29.166667,24.35
2014 , MNP999 : Ac38 Ac39T Ac34 Ac40T : -29.166667,24.35
2014 , MNP1000 : Ac38 Ac41T Ac42 Ac40T : -29.166667,24.35
2014 , MNP1000 : Ac6 Ac6 : -29.166667,24.35
2014 , AEP1003 : Ac1 Ac1 Ac1 Ac2 : -33.446111,25.745833
2014 , AEP1006 : Ac7 Ac8 : -33.446111,25.745833
2014 , AEP1006 : Ac38 Ac44T Ac43 : -33.446111,25.745833
2014 , AEP1006 : Ac31 Ac8 : -33.446111,25.745833
2014 , KNP586 : Ac1 Ac1 Ac1 Ac1 : -24.011389,31.485278
2014 , MNP958 : Ac26 Ac26 Ac26 Ac2 : -29.166667,24.35
2014 , WC 107 : Ac20 Ac32 Ac21 Ac10 : South Africa, Western Cape
2014 , WC 108 : Ac1 Ac1 Ac1 Ac2 : South Africa, Western Cape
2014 , KZN138 : Ac12 Ac12 Ac13 Ac13 Ac14 : South Africa, KwaZulu-Natal
2014 , KZN132 : Ac12 Ac12 Ac13 Ac13 Ac14 : South Africa, KwaZulu-Natal
2014 , KZN130 : Ac12 Ac12 Ac13 Ac13 Ac14 : South Africa, KwaZulu-Natal
2014 , FS56 : Ac15 Ac16 Ac16 Ac16 : South Africa, Free State
2014 , FS383 : Ac16 Ac16 Ac16 : South Africa, Free State
2014 , Berg10 : Ac33 Ac3 Ac6 : -28.733333,29.366667
2014 , Berg10 : Ac19 Ac19 Ac3 Ac6 : -28.733333,29.366667
2014 , Berg10 : Ac17 Ac18 Ac45 Ac46T Ac47 : -28.733333,29.366667
2014 , Berg12 : Ac1 Ac1 Ac1 Ac22 : -28.733333,29.366667
2014 , Berg12 : Ac20 Ac21 Ac21 Ac20 : -28.733333,29.366667
2014 , Berg12 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg19 : Ac23 Ac24 Ac25 Ac34 : -28.733333,29.366667
2014 , Berg19 : Ac26 Ac12 Ac12 Ac27 Ac14 : -28.733333,29.366667
2014 , Berg19 : Ac1 Ac1 Ac1 Ac22 : -28.733333,29.366667
2014 , Berg19 : Ac19 Ac3 Ac6 Ac6 : -28.733333,29.366667
2014 , Berg25 : Ac1 Ac1 Ac1 Ac22 : -28.733333,29.366667
2014 , Berg25 : Ac1 : -28.733333,29.366667
2014 , Berg25 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg25 : Ac1 Ac1 Ac1 Ac1 : -28.733333,29.366667
2014 , Berg25 : Ac1 Ac1 Ac1 Ac2 Ac2 : -28.733333,29.366667
2014 , Berg27 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg27 : Ac1 Ac1 Ac1 Ac1 : -28.733333,29.366667
2014 , Berg27 : Ac1 Ac1 Ac1 Ac2 Ac2 : -28.733333,29.366667
2014 , Berg17 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg24 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg24 : Ac1 Ac1 Ac1 Ac2 Ac2 : -28.733333,29.366667
2014 , Berg24 : Ac1 Ac28 Ac2 Ac28 : -28.733333,29.366667
2014 , Berg30 : Ac1 Ac1 Ac1 Ac2 : -28.733333,29.366667
2014 , Berg30 : Ac1 Ac1 Ac1 Ac2 Ac2 : -28.733333,29.366667
2014 , Berg20 : Ac1 Ac1 Ac1 Ac1 : -28.733333,29.366667