update notebook

Author: MelodyJIN-Y

.github/workflows/pkgdown.yml

@@ -109,7 +109,7 @@ jobs:
       - name: Print package versions
         run: |
           cat("R version:", R.version.string, "\n\n")
-          pkgs <- c("Seurat", "SeuratObject", "harmony", "scDblFinder",
+          pkgs <- c("Seurat", "SeuratObject", "harmony",
                     "edgeR", "limma", "speckle", "ggplot2", "pkgdown")
           for (pkg in pkgs) {
             cat(sprintf("%-20s %s\n", pkg, as.character(packageVersion(pkg))))

NEWS.md

@@ -11,8 +11,8 @@
 * Module 1: Quality Control
   - Load and explore 10X Genomics data
   - Calculate per-cell QC metrics
-  - Doublet detection with scDblFinder
-  - Cell filtering and pseudobulk overview
+  - Cell and gene filtering
+  - Pseudobulk overview
 
 * Module 2: Normalisation, Integration & Clustering
   - SCTransform v2 normalisation