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    128 repositories

    • wrapica

      Public
      A suite of secondary / tertiary functions for running ICA API calls
      Python
      •
      GNU General Public License v3.0
      •0•2•7•0•Updated May 5, 2026May 5, 2026

    • cwl-ica

      Public
      A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide
      Common Workflow Language
      •
      MIT License
      •2•13•11•3•Updated May 5, 2026May 5, 2026

    • htsget-rs

      Public
      A server implementation of the htsget protocol for bioinformatics in Rust
      rustbioinformaticsaws-lambda
      rustbioinformaticsaws-lambdaserverlesshtsgetbioinfonoodles
      Rust
      •
      MIT License
      •10•49•14•4•Updated May 4, 2026May 4, 2026

    • orcahouse-doc

      Public
      📘 Warehouse Documentation
      HTML
      •0•0•0•1•Updated May 4, 2026May 4, 2026

    • orcahouse

      Public
      🐳 UMCCR Pipeline & Workflow Data Warehouse
      HCL
      •0•0•15•2•Updated May 4, 2026May 4, 2026

    • terraform-provider-remscontent

      Public
      A Terraform provider to manage the *content* of a REMS instance
      Go
      •
      Mozilla Public License 2.0
      •0•0•4•6•Updated May 4, 2026May 4, 2026

    • sash

      Public
      UMCCR post-processing WGS workflow
      Nextflow
      •
      MIT License
      •0•1•3•1•Updated May 1, 2026May 1, 2026

    • steps-s3-copy

      Public
      A Steps orchestration for copying large volumes of S3 objects
      TypeScript
      •
      MIT License
      •0•0•10•0•Updated Apr 30, 2026Apr 30, 2026

    • libica

      Public
      :snake: Python SDK for Illumina Connected Analytics (ICA) :dragon:
      Python
      •
      MIT License
      •4•5•0•1•Updated Apr 23, 2026Apr 23, 2026

    • terraform-common

      Public
      Common modules/units/stacks used by reference from our terraform infrastructure
      HCL
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • curtrail

      Public
      A Python library that turns AWS and ICA bill/log data into neat and tidy Polars dataframes
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2026Apr 23, 2026

    • oncoanalyser

      Public
      A comprehensive cancer DNA/RNA analysis and reporting pipeline
      Nextflow
      •
      MIT License
      •28•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • conda_recipes

      Public
      Conda recipes for GitHub tools not available from conda-forge/bioconda
      Shell
      •0•0•0•0•Updated Apr 20, 2026Apr 20, 2026

    • htsget-deploy

      Public
      Deployment logic for htsget-rs
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • RNAsum

      Public
      Pipeline for generating RNAseq-based cancer patient reports
      rnaseq-pipelinernaseq-report
      rnaseq-pipelinernaseq-report
      R
      •
      Other
      •7•12•17•0•Updated Apr 15, 2026Apr 15, 2026

    • k8tre-aws

      Public
      Infrastructure for UMCCR deployment of k8tre
      HCL
      •3•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • k8tre

      Public
      Application for UMCCR deployment of k8tre
      Python
      •
      MIT License
      •10•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • copyrite

      Public
      A CLI tool for efficient checksum/copy operations across object stores
      awsclouds3
      awsclouds3gcs
      Rust
      •
      MIT License
      •0•2•14•0•Updated Apr 10, 2026Apr 10, 2026

    • aws-lambda-rust-runtime

      Public
      A Rust runtime for AWS Lambda
      Rust
      •
      Apache License 2.0
      •392•0•0•0•Updated Apr 8, 2026Apr 8, 2026

    • infrastructure

      Public
      Infrastructure as Code at UMCCR
      infrastructureawsterraform
      infrastructureawsterraform
      Python
      •8•11•16•3•Updated Apr 2, 2026Apr 2, 2026

    • bolt

      Public
      UMCCR post-processing WGS logic and CLI tool
      Python
      •
      GNU General Public License v3.0
      •1•0•5•1•Updated Mar 30, 2026Mar 30, 2026

    • gene_panels

      Public
      R
      •0•0•1•0•Updated Mar 27, 2026Mar 27, 2026

    • ipv6-exploration

      Public
      HCL
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • rems-umccr

      Public
      A Docker image of REMS built for deployment in AWS and setup for UMCCR configuration
      TypeScript
      •
      MIT License
      •0•0•0•4•Updated Mar 25, 2026Mar 25, 2026

    • dracarys

      Public
      :dragon_face: DRAGEN workflow tidying :fire:
      cancer-genomicsmultiqcr-package
      cancer-genomicsmultiqcr-packager6qcdragen
      R
      •
      Other
      •0•1•18•1•Updated Mar 23, 2026Mar 23, 2026

    • cloudtrail-parquet-lambda

      Public
      A lambda for creating parquet files from CloudTrail JSON
      TypeScript
      •
      MIT License
      •0•0•1•0•Updated Mar 20, 2026Mar 20, 2026

    • gpgr

      Public
      :books: Genomics Platform Group Reporter
      rcancer-genomics
      rcancer-genomics
      R
      •
      Other
      •1•9•5•1•Updated Mar 19, 2026Mar 19, 2026

    • linxreport

      Public
      Linx Result Reporter
      R
      •
      Other
      •0•3•0•0•Updated Mar 6, 2026Mar 6, 2026

    • pyriandx

      Public
      CLI client and Python SDK/Library for PierianDx CGW web services
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2026Mar 5, 2026

    • rportal

      Public
      :crystal_ball: R functionality for UMCCR Data Portal
      R
      •
      Other
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026
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