biocommons
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23 repositories
anyvar
PublicLightweight, portable variation registration and retrievalpython-package
Public templatehgvs
PublicPython library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).biocommons.github.io
Publicbiocommons websiteuta
PublicUniversal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker im…discussions
Public.github
PublicOrganization-wide GitHub configurationeutils
Public archivesimplified searching, fetching, and parsing records from NCBI using their E-utilities interfacebioutils
Publicprovides common tools and lookup tables used primarily by the hgvs and uta packagesbiocommons.seqrepo
Publicnon-redundant, compressed, journalled, file-based storage for biological sequencesseqrepo-rest-service
PublicOpenAPI-based REST interface to biological sequences and sequence metadatauta-rest-service
PublicREST service over https://github.com/biocommons/uta/hackathon
PublicHackathon projects and planning.mirrors-ncbi
PublicMakefile (of all things) to space-efficiently mirror selected NCBI resourcesuta-align
PublicC-based Needleman-Wunsch and Smith-Waterman alignment algorithms with a Python interface.hgvs-eval
Publiclogos
Publichgvs-dataproviders-rest
Publicuta-clients
Publicdockerbase
Publichgvs-installation-test
Publicbiocommons-python
Public
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