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    127 repositories

    • ImageArray

      Public
      a framework for on-disk and in-memory image arrays
      R
      •
      Other
      •3•5•5•1•Updated May 5, 2026May 5, 2026

    • neuroblastoma_gene_sets

      Public
      A repository for documentation and storage of neuroblastoma related gene sets
      Python
      •0•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • VoltRon

      Public
      Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
      R
      •
      Other
      •21•120•2•1•Updated Apr 28, 2026Apr 28, 2026

    • VoltRonStore

      Public
      On-Disk support and dependancies for VoltRon
      Other
      •1•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • ZarrDataFrame

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • dummy-spatialdata

      Public
      Generate dummy spatialdata objects
      Python
      •0•2•1•0•Updated Apr 25, 2026Apr 25, 2026

    • flexynesis

      Public
      A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
      Python
      •
      Other
      •34•105•11•0•Updated Apr 19, 2026Apr 19, 2026

    • pycacheR

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • cacheR

      Public
      R
      •
      Other
      •0•1•0•0•Updated Apr 15, 2026Apr 15, 2026

    • OMERarr

      Public
      An R package for reading, writing and validating OME-Zarr (meta)data (based on ome-zarr-models.py)
      R
      •1•0•7•0•Updated Apr 10, 2026Apr 10, 2026

    • pigx_bsseq

      Public
      bisulfite sequencing pipeline from fastq to methylation reports
      bioinformaticssnakemakepipeline
      bioinformaticssnakemakepipelineguixreproducibility
      Python
      •
      GNU General Public License v3.0
      •4•13•47•0•Updated Apr 10, 2026Apr 10, 2026

    • protEncode

      Public
      Repository relating to the pipeline on using attention-weighted PLMs.
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•1•1•0•Updated Apr 6, 2026Apr 6, 2026

    • RSimpleITK

      Public
      R Installer for SimpleITK with Elastix
      Shell
      •0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • SimpleITKRInstaller

      Public
      Remotes based SimpleITK R installer.
      R
      •11•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • bimsbbioinfo.r-universe.dev

      Public
      R-universe BIMSBbioinfo
      0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • Course_SystemsBiology

      Public
      JavaScript
      •0•0•0•0•Updated Mar 6, 2026Mar 6, 2026

    • rstudio

      Public
      RStudio is an integrated development environment (IDE) for R
      Java
      •
      Other
      •1.2k•0•0•0•Updated Feb 28, 2026Feb 28, 2026

    • CompassDock

      Public
      Official Implementation of CompassDock
      drug-discoverymolecular-biologyprotein-ligand-interactions
      drug-discoverymolecular-biologyprotein-ligand-interactionsmolecular-dockingdrug-target-interactionsbinding-affinity
      Python
      •
      Other
      •3•21•0•0•Updated Feb 13, 2026Feb 13, 2026

    • rcas-web

      Public
      Web interface for RCAS
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Feb 9, 2026Feb 9, 2026

    • pigx_rnaseq

      Public
      Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
      snakemakepipelinernaseq
      snakemakepipelinernaseqguixreproducibility
      Python
      •
      GNU General Public License v3.0
      •12•21•23•0•Updated Jan 30, 2026Jan 30, 2026

    • teampulse

      Public
      team Pulse app
      HTML
      •0•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • HDF5DataFrame

      Public
      R
      •
      Other
      •1•1•0•0•Updated Jan 20, 2026Jan 20, 2026

    • collab_barleben_kolesnichenko_colitis

      Public
      Collaboration project with Luisa Barleben Kolesnichenko Lab - Acute Colitis in Mice
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 16, 2026Jan 16, 2026

    • BPCells

      Public
      Scaling Single Cell Analysis to Millions of Cells
      C++
      •
      Other
      •32•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • VoltRon_manuscript

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 4, 2026Jan 4, 2026

    • causal_reasoning

      Public
      A collection of tools, which, when given a readout of a perturbation experiment, runs tools such as CARNIVAL/causalR to infer the causal factors that leads to t…
      R
      •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • ZarrArray_old

      Public
      Zarr backend for DelayedArray objects
      R
      •0•2•3•0•Updated Dec 2, 2025Dec 2, 2025

    • PocketVina

      Public
      GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementation of PocketVina
      protein-ligand-dockingdrug-discoverymolecular-biology
      protein-ligand-dockingdrug-discoverymolecular-biologyprotein-ligand-interactionsprotein-ligand-binding-affinitymolecular-dockingautodock-vinaautodock-gpup2rankquickvina
      C++
      •
      MIT License
      •10•71•2•1•Updated Nov 22, 2025Nov 22, 2025

    • pigx-common

      Public
      Common infrastructure used by all PiGx pipelines
      Python
      •
      GNU General Public License v3.0
      •1•0•2•3•Updated Nov 9, 2025Nov 9, 2025

    • anglemania

      Public
      Improved feature extraction for scRNA-seq dataset integration.
      R
      •
      GNU General Public License v3.0
      •0•4•5•0•Updated Oct 23, 2025Oct 23, 2025
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