PYOPENMS_MSMAPPING module takes very long time

[xuel12]

Description of the bug

It appears PYOPENMS_MSMAPPING takes significantly longer time to finish, so the pipeline killed due to timeout frequently (My data is 3 condition* 6 replicates, 400MB per MS1 and MS2 combined profile mode, Thermo QE DDA metablomics). Is it better to change the resource requirement or give more retry limit (currently it is 2)?

Current it is process_medium, which might be too restrict?

process PYOPENMS_MSMAPPING{
tag "$meta.id"
label 'process_medium'
conda "bioconda::pyopenms=2.9.1"
...
}

Command used and terminal output

nextflow run 'https://github.com/nf-core/metaboigniter'
		 -name Mydata
		 -params-file 'mydata.json'
		 -with-tower 'myapi'
		 -r master
		 -profile singularity

Relevant files

System information

Nextflow 23.04.2 build 5870
HPC
Slurm
Docker
nf-core/metaboigniter latest image pull, downloaded from https://github.com/nf-core/metaboigniter.git