ci: Update GH token #784
Workflow file for this run
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| name: Linux | |
| on: | |
| pull_request: | |
| types: [opened, synchronize] | |
| paths-ignore: | |
| - README.md | |
| - CHANGELOG.md | |
| - .gitignore | |
| - 'CITATION.cff' | |
| branches: | |
| - develop | |
| - master | |
| - rc** | |
| push: | |
| branches: | |
| - master | |
| - docs-test-env | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: Test linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install & setup environment | |
| uses: prefix-dev/[email protected] | |
| with: | |
| pixi-version: v0.53.0 | |
| cache: true | |
| auth-host: prefix.dev | |
| auth-token: ${{ secrets.PREFIX_DEV_TOKEN }} | |
| manifest-path: pyproject.toml | |
| - name: Cache barrel cortex model | |
| id: cache-bc-model | |
| uses: actions/cache@v4 | |
| with: | |
| path: barrel_cortex/ | |
| key: barrel-cortex-model | |
| - name: Download barrel cortex model | |
| if: steps.cache-bc-model.outputs.cache-hit != 'true' | |
| run: | | |
| echo ------------ Downloading barrel cortex model ------------- | |
| pixi r download_bc_model | |
| - name: Preliminary setup | |
| run: | | |
| echo "------------ Preliminary setup for tests -------------" | |
| echo "Creating tests/logs/ directory..." | |
| mkdir -p ./tests/logs/ | |
| unset DISPLAY | |
| if [ ! -d "$HOME/tmp" ]; then | |
| mkdir $HOME/tmp | |
| fi | |
| export TMPDIR=$HOME/tmp | |
| pixi r configure | |
| - name: Test ISF | |
| run: | | |
| echo "Starting test suite..." | |
| pixi r pytest -n 5 -rsx -vv --color=yes --durations=0 --cov-report xml:tests/logs/report_py38.xml --cov=. tests || exit 1 | |
| env: | |
| GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DASK_CONFIG: tests/dask_config.yml | |
| - name: Save test logs | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ always() }} | |
| with: | |
| name: ${{ github.run_id }}_logs | |
| path: | | |
| ./tests/logs/ | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./tests/logs/report_py38.xml | |
| verbose: true | |