Fix build directory conflicts - clean up before mkdir

Author: mansurjisan

containers/nos-workflow.def

@@ -54,7 +54,7 @@ From: rockylinux/rockylinux:9
     wget https://download.osgeo.org/proj/proj-${PROJ_VERSION}.tar.gz
     tar -xzf proj-${PROJ_VERSION}.tar.gz
     cd proj-${PROJ_VERSION}
-    mkdir build && cd build
+    rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release
     make -j2
     make install
@@ -117,7 +117,7 @@ From: rockylinux/rockylinux:9
     wget -O ecflow.tar.gz "https://confluence.ecmwf.int/download/attachments/8650755/ecFlow-${ECFLOW_VERSION}-Source.tar.gz?api=v2"
     tar -xvf ecflow.tar.gz && rm ecflow.tar.gz
     mv ecFlow* ecflow
-    cd ecflow && mkdir build && cd build
+    cd ecflow && rm -rf build && mkdir build && cd build
     cmake .. -DENABLE_UI=OFF \
         -DBoost_ROOT=/usr \
         -DENABLE_TESTS=OFF \
@@ -133,6 +133,7 @@ From: rockylinux/rockylinux:9
     # BUILD ADCIRC
     # ============================================================
     cd /tmp
+    rm -rf adcirc adcirc_build
     git clone --depth 1 --branch v${ADCIRC_VERSION} https://github.com/adcirc/adcirc
     mkdir adcirc_build && cd adcirc_build
     export PATH=$PATH:/usr/lib64/openmpi/bin
@@ -153,6 +154,7 @@ From: rockylinux/rockylinux:9
     # ============================================================
     [ -e /usr/bin/python ] || ln -s /usr/bin/python3 /usr/bin/python
     cd /tmp
+    rm -rf schism schism_build
     git clone --depth 1 --branch v${SCHISM_VERSION} https://github.com/schism-dev/schism
     mkdir schism_build && cd schism_build
     export PATH=$PATH:/usr/lib64/openmpi/bin
@@ -168,57 +170,65 @@ From: rockylinux/rockylinux:9
     cd /tmp
 
     # BACIO
+    rm -rf NCEPLIBS-bacio
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git
-    cd NCEPLIBS-bacio && mkdir build && cd build
+    cd NCEPLIBS-bacio && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-bacio
 
     # W3EMC
+    rm -rf NCEPLIBS-w3emc
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-w3emc.git
-    cd NCEPLIBS-w3emc && mkdir build && cd build
+    cd NCEPLIBS-w3emc && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-w3emc
 
     # W3NCO
+    rm -rf NCEPLIBS-w3nco
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-w3nco.git
-    cd NCEPLIBS-w3nco && mkdir build && cd build
+    cd NCEPLIBS-w3nco && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-w3nco
 
     # PROD_UTIL
+    rm -rf NCEPLIBS-prod_util
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-prod_util.git
-    cd NCEPLIBS-prod_util && mkdir build && cd build
+    cd NCEPLIBS-prod_util && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-prod_util
 
     # IP
+    rm -rf NCEPLIBS-ip
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-ip.git
-    cd NCEPLIBS-ip && mkdir build && cd build
+    cd NCEPLIBS-ip && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-ip
 
     # G2C
+    rm -rf NCEPLIBS-g2c
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-g2c.git
-    cd NCEPLIBS-g2c && mkdir build && cd build
+    cd NCEPLIBS-g2c && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-g2c
 
     # G2
+    rm -rf NCEPLIBS-g2
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-g2.git
-    cd NCEPLIBS-g2 && mkdir build && cd build
+    cd NCEPLIBS-g2 && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-g2
 
     # BUFR
+    rm -rf NCEPLIBS-bufr
     git clone --depth 1 https://github.com/NOAA-EMC/NCEPLIBS-bufr.git
-    cd NCEPLIBS-bufr && mkdir build && cd build
+    cd NCEPLIBS-bufr && rm -rf build && mkdir build && cd build
     cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/ncep -DBUILD_TESTING=OFF -DCMAKE_PREFIX_PATH=/opt/ncep
     make -j2 && make install
     cd /tmp && rm -rf NCEPLIBS-bufr