A clear and concise description of what the use case is. For example: my data is from [...] I have found this issue that is similar to the question I have, although I don't fully understand the answer yet. I was wondering if I could get a clearer explanation. If I used the ppois method in bdgcmp, then my understanding is that the output of bdgPeakcall will have the 5th column as the scores of the peaks in the format: score = -log10(p-value). Is this right?
In addition, if I wanted to get all peaks without any filtering on scores, what cutoff should I use? I tried 0 but then I get that basically each chromosome is a peak.
Thank you in advance.
A clear and concise description of what the use case is. For example: my data is from [...] I have found this issue that is similar to the question I have, although I don't fully understand the answer yet. I was wondering if I could get a clearer explanation. If I used the ppois method in bdgcmp, then my understanding is that the output of bdgPeakcall will have the 5th column as the scores of the peaks in the format: score = -log10(p-value). Is this right?
In addition, if I wanted to get all peaks without any filtering on scores, what cutoff should I use? I tried 0 but then I get that basically each chromosome is a peak.
Thank you in advance.