Code quality

Add `lmdb` as alternative file format #1609

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Run time

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Job	Run time
Pre-commit - black	2m 59s
Pre-commit - flake8	3m 44s
Pre-commit - pydocstyle	2m 48s
Pre-commit - mypy	2m 36s
Pre-commit - docformatter	3m 8s
	15m 15s