Hemizygous calls

[abedkurdi]

Hello there,

Does Tracy decompose can find Hemizygous calls?

Thank you!

[tobiasrausch]

Tracy makes no assumption about the underlying ploidy but decomposes at most 2 alleles. Thus, hemizygosity should cause most variants to be called as hom. ALT.

[abedkurdi]

Thank you so much for your prompt response!
Do you have any idea how to proceed to find,if any, hemizygous call?

I appreciate any input.
Thank you!