Documentation, etc.

[grabear]

In order to help others understand how our package works, we have set goals for the way our package is organized, branded, documented, and produces output. This epic will hopefully bring some of those ideas together.

[sdhutchins]

#111 should be cited here.

[sdhutchins]

This needs to be automated. Hopefully after we remove the other modules.

[sdhutchins]

Automated and fixed in #215