rnaseq_pathogen/_quarto.yml at main · dalmolingroup/rnaseq_pathogen · GitHub

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project:
  type: book
  output-dir: docs

book:
  title: "RNA-seq: Patógenos associados a hospedeiros"
  author: "Dalmolin Systems Biology Group"
  chapters:
    - index.qmd
    - analysis/00_setup.qmd
    - analysis/01_preprocessing.qmd
    - analysis/02_quantification.qmd
    - analysis/03_differential_expression.qmd
    - analysis/04_downstream_analyses.qmd
  downloads: [pdf]
  reader-mode: true
  favicon: content/images/dalmolin_icon.svg
  site-url: https://dalmolingroup.imd.ufrn.br/rnaseq_pathogen/
  repo-url: https://github.com/dalmolingroup/rnaseq_pathogen
  page-footer:
      RNA-seq - Patógenos associados a hospedeiros é um curso construído por membros do
      <a href="https://dalmolingroup.imd.ufrn.br/">Dalmolin Systems Biology Group</a>.

knitr:
  opts_chunk:
    message: false
    warning: false

format:
  pdf:
    keep-tex: true
    include-in-header:
      text: |
         \usepackage{fvextra}
         \DefineVerbatimEnvironment{Highlighting}{Verbatim}{breaklines,commandchars=\\\{\}}
    include-before-body:
      text: |
        \RecustomVerbatimEnvironment{verbatim}{Verbatim}{
          showspaces = false,
          showtabs = false,
          breaksymbolleft={},
          breaklines
          % Note: setting commandchars=\\\{\} here will cause an error
        }
    theme:
      light: flatly
      dark: darkly
  html:
    theme:
      light: flatly
      dark: darkly
    callout-appearance: simple
    code-link: true
    code-overflow: wrap
    code-block-bg: true
    code-block-border-left: "#b19cd9"
    highlight-style: github