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Feel free to suggest links to Jupyter notebooks made with the CoLoMoTo Docker distribution
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(supplementary information of papers, tutorials, etc.).
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- [Reproducible Boolean model analyses and simulations with the CoLoMoTo software suite: a tutorial](https://zenodo.org/records/15602427). The tutorial specifically focuses on the analysis of a previously published model of the regulatory network controlling mammalian cell proliferation by Sizek et al, 2019.\
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![colomoto-docker:2025-03-01](https://img.shields.io/badge/colomoto--docker-2025--03--01-brightgreen)
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[![DOI:10.1098/rsfs.2025.0002](https://img.shields.io/badge/DOI-10.1098/rsfs.2025.0002-blue.svg)](https://doi.org/10.1098/rsfs.2025.0002)
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- [UpPMaBoSS notebook for the cell fate model](https://nbviewer.org/github/colomoto/colomoto-docker/blob/2024-04-01/usecases/Population-level%20Cell%20Fate%20with%20UpPMaBoSS/CellFateModel_uppmaboss.ipynb). This Jupyter notebook implements all the analyses presented in the UpPMaBoSS: a tool for dynamic cell population modeling manuscript by Stoll et al.\
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![colomoto-docker:2019-05-24](https://img.shields.io/badge/colomoto--docker-2019--05--24-brightgreen)

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