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Use smaller test file for DNA training in pyrodigal.tests
1 parent fdbc054 commit cc771b3

6 files changed

Lines changed: 3 additions & 3 deletions
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pyrodigal/tests/test_connection_scorer.py

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Original file line numberDiff line numberDiff line change
@@ -60,7 +60,7 @@ def test_score_connections_final(self):
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@unittest.skipUnless(data.files, "importlib.resources not available")
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def test_score_connections_train(self):
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record = data.load_record("GCF_001457455.1_NCTC11397_genomic.fna.gz")
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record = data.load_record("GCF_001457455.1_NCTC11397_genomic_100kb.fna.gz")
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nodes_expected = scored_nodes(record, final=False, backend=None)
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nodes_actual = scored_nodes(record, final=False, backend=self.backend)
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for n1, n2 in zip(nodes_expected, nodes_actual):

pyrodigal/tests/test_training_info.py

Lines changed: 2 additions & 2 deletions
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@@ -67,8 +67,8 @@ def test_pickle_metagenomic(self):
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@unittest.skipUnless(platform.machine() == "x86_64", "Reference training file was created on x86-64")
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@unittest.skipUnless(sys.platform == "linux", "Reference training file was created on Linux")
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def test_train_closed(self):
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records = data.load_records("GCF_001457455.1_NCTC11397_genomic.fna.gz")
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with data.load("GCF_001457455.1_NCTC11397_genomic.tinf_closed.bin", "rb") as f:
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records = data.load_records("GCF_001457455.1_NCTC11397_genomic_100kb.fna.gz")
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with data.load("GCF_001457455.1_NCTC11397_genomic_100kb.tinf_closed.bin.gz", "rb") as f:
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expected = TrainingInfo.load(f)
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orf_finder = GeneFinder(closed=True)
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actual = orf_finder.train(*(str(r.seq) for r in records))

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