Release v3.7.0

Author: althonos

.github/workflows/package.yml

@@ -49,7 +49,7 @@ jobs:
 
   wheel-macos-x86_64:
     name: Build MacOS wheels (x86-64)
-    runs-on: macOS-13
+    runs-on: macOS-latest
     steps:
     - uses: actions/checkout@v4
       with:
@@ -69,7 +69,7 @@ jobs:
 
   wheel-macos-aarch64:
     name: Build MacOS wheels (Aarch64)
-    runs-on: macOS-13
+    runs-on: macOS-latest
     steps:
     - uses: actions/checkout@v4
       with:
@@ -89,7 +89,7 @@ jobs:
 
   wheel-win32-x86_64:
     name: Build Windows wheels (x86-64)
-    runs-on: windows-2019
+    runs-on: windows-latest
     steps:
     - uses: actions/checkout@v4
       with:
@@ -208,10 +208,10 @@ jobs:
     - uses: actions/checkout@v4
       with:
         submodules: true
-    - name: Set up Python 3.12
+    - name: Set up Python 3.13
       uses: actions/setup-python@v5
       with:
-        python-version: 3.12
+        python-version: 3.13
     - name: Download source distribution
       uses: actions/download-artifact@v4
       with:

CHANGELOG.md

@@ -6,7 +6,28 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyrodigal/compare/v3.6.3...HEAD
+[Unreleased]: https://github.com/althonos/pyrodigal/compare/v3.7.0...HEAD
+
+
+## [v3.7.0] - 2026-01-07
+[v3.7.0]: https://github.com/althonos/pyrodigal/compare/v3.6.3...v3.7.0
+
+### Added
+- SWAR (SIMD Within A Register) implementation of the connection scoring pre-filter for platforms lacking SSE or NEON support.
+- Support for Pyodide/Emscripten builds ([#73](https://github.com/althonos/pyrodigal/issues/73)).
+- `source_separator` argument to `Genes.write_gff` to support using the preferred GFF3 format ([#77](https://github.com/althonos/pyrodigal/issues/77)).
+
+### Fixed
+- Detection of SIMD flags on non-MSVC compilers used on Windows.
+- Incorrect metadata keys in `pyproject.toml` causing compilation issues with recent `build` versions.
+- Miscellaneous broken links in documentation and `README.md`.
+- Confusing documentation of the `--no-stop-codon` flag in CLI ([#66](https://github.com/althonos/pyrodigal/pull/66), by [@apcamargo](https://github.com/apcamargo)).
+
+### Changed
+- Internal type of strands encoded in SIMD pre-filter to `uint8_t` to only have to perform unsigned comparisons.
+
+### Removed
+- Deprecated code for MMX detection and testing.
 
 
 ## [v3.6.3-post1] - 2025-03-04

docs/_static/json/switcher.json

@@ -1,6 +1,11 @@
 [
     {
-        "name": "v3.6 (stable)",
+        "name": "v3.7 (stable)",
+        "version": "3.7.0",
+        "url": "https://pyrodigal.readthedocs.io/en/v3.7.0/"
+    },
+    {
+        "name": "v3.6",
         "version": "3.6.3",
         "url": "https://pyrodigal.readthedocs.io/en/v3.6.3/"
     },

pyproject.toml

@@ -4,11 +4,12 @@ build-backend = "scikit_build_core.build"
 
 [project]
 name = "pyrodigal"
-version = "3.6.3-post1"
+version = "3.7.0"
 description = "Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes."
 readme = "README.md"
 requires-python = ">=3.7"
-license = { file = "COPYING" }
+license = "GPL-3.0-or-later"
+license-files = ["COPYING"]
 authors = [
   { name = "Martin Larralde", email = "martin.larralde@embl.de" },
 ]
@@ -17,7 +18,6 @@ classifiers = [
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Developers",
     "Intended Audience :: Science/Research",
-    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
     "Operating System :: OS Independent",
     "Programming Language :: C",
     "Programming Language :: Cython",

src/pyrodigal/lib.pyx

@@ -3570,7 +3570,7 @@ cdef class Genes:
         .. versionadded:: 3.4.0
            The ``full_id`` parameter.
 
-        .. versionadded:: 3.6.4
+        .. versionadded:: 3.7.0
            The ``source_separator`` parameter.
 
         """