I am trying to install the package as suggest to a site-packages using --user, but it failed. Then I decided to install it in a conda managed virtual environment. It was successful. Here is what I did. Has anyone successfully run this tool?
#create a virtual environment named CLAM
conda create -n CLAM python=3.8
conda activate CLAM
#create a environment.yml files to include dependencies:
channels:
- conda-forge
- bioconda
- anaconda
dependencies:
- pysam>=0.9.0,<0.22.0
- statsmodels>=0.13.0,<0.15.0
- tqdm>=4.60.0,<5.0.0
- pybedtools>=0.9.0,<1.0.0
- mpmath>=1.2.0,<2.0.0
#install dependencies and CLAM
conda install -f environment.yml
pip install --index-url https://test.pypi.org/simple/ --no-deps CLAM
I am trying to install the package as suggest to a site-packages using --user, but it failed. Then I decided to install it in a conda managed virtual environment. It was successful. Here is what I did. Has anyone successfully run this tool?
#create a virtual environment named CLAM
#create a environment.yml files to include dependencies:
channels:
- conda-forge
- bioconda
- anaconda
dependencies:
- pysam>=0.9.0,<0.22.0
- statsmodels>=0.13.0,<0.15.0
- tqdm>=4.60.0,<5.0.0
- pybedtools>=0.9.0,<1.0.0
- mpmath>=1.2.0,<2.0.0
#install dependencies and CLAM