Data Questions

[andrewwarrington]

Describe the bug

I'm trying to run your data pre-processing pipelines in the linked MEDS(_transforms) fork. It appears like that preprocessing pipeline doesn't use the MIMIC FHIR data version.

To Reproduce

• Searching "FHIR" in this repository or the linked MEDS fork doesn't return any meaningful results.
• Looking into the extract pipeline it looks like the default directory structure is more akin to the regular OMOP MIMIC-IV structure.

I think the pipeline should just use the regular MIMIC data, is this correct?

Thank you for your help!
Andy