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‎.Rbuildignore‎

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inst/doc/._vignettes.zip
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Pathway_Structure_2017.R
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bioxpax-reactome-pi3k-cascade.owl
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downloadPc2.R
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import_pathcommons.R
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paxtoolsr.R
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plots_directed.html

‎DESCRIPTION‎

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Type: Package
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Title: Simulate Expression Data from 'igraph' Networks
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Version: 1.0.2
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Date: 2020-07-22
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Date: 2021-07-27
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Authors@R: c(person("S. Thomas", "Kelly",email = "[email protected]", role = c("aut", "cre")),
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person("Michael A.", "Black", email = "[email protected]", role = c("aut", "ths")),
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person("Robrecht", "Cannoodt", role = c("ctb")),

‎R/graphsim-package.R‎

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#' A BibTeX entry for LaTeX users is: \preformatted{
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#' @article{Kelly2020joss02161,
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#' doi = {10.21105/joss.02161},
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#' url ={https://doi.org/10.21105/joss.02161},
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#' year = {2020},
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#' publisher = {The Open Journal},
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#' volume = {5},

‎README.md‎

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[![Travis-CI Build Status](https://travis-ci.com/TomKellyGenetics/graphsim.svg?branch=master)](https://travis-ci.com/TomKellyGenetics/graphsim)
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[![CircleCI build status](https://circleci.com/gh/TomKellyGenetics/graphsim.svg?style=svg)](https://circleci.com/gh/TomKellyGenetics/graphsim)
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[![AppVeyor Build Status](https://ci.appveyor.com/api/projects/status/github/TomKellyGenetics/graphsim?branch=master&svg=true)](https://ci.appveyor.com/project/TomKellyGenetics/graphsim)
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[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
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[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
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[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/graphsim)](https://cran.r-project.org/package=graphsim)
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[![Downloads](https://cranlogs.r-pkg.org/badges/graphsim)](https://CRAN.R-project.org/package=graphsim)
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[![Total Downloads](https://cranlogs.r-pkg.org/badges/grand-total/graphsim?color=orange)](https://CRAN.R-project.org/package=graphsim)
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[![DOI](https://zenodo.org/badge/67395230.svg)](https://zenodo.org/badge/latestdoi/67395230)
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[![bioRxiv](https://img.shields.io/badge/biorXiv-10.1101%2F2020.03.02.972471-blue)](https://doi.org/10.1101/2020.03.02.972471)
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[![status](https://joss.theoj.org/papers/96016c6a55d7f74bacebd187c6ededd6/status.svg)](https://joss.theoj.org/papers/96016c6a55d7f74bacebd187c6ededd6)
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[![status](https://joss.theoj.org/papers/96016c6a55d7f74bacebd187c6ededd6/status.svg)](https://joss.theoj.org/papers/10.21105/joss.02161)
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[![](https://img.shields.io/badge/Altmetric-72-blue.svg)](https://www.altmetric.com/details/77053356)
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‎man/graphsim-package.Rd‎

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‎paper/paper.bib‎

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volume = {Complex Systems},
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pages = {1695},
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year = {2006},
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url = {http://igraph.org},
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url = {http://igraph.org/},
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‎vignettes/plots_directed.Rmd‎

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<p>Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., et al. 2014. “The Reactome pathway knowledgebase.” Journal Article. <em>Nucleic Acids Res</em> 42 (database issue): D472–D477. <a href="https://doi.org/10.1093/nar/gkt1102">https://doi.org/10.1093/nar/gkt1102</a>.</p>
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<p>Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="http://igraph.org">http://igraph.org</a>.</p>
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<p>Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="https://igraph.org/">https://igraph.org/</a>.</p>

‎vignettes/plots_directed.html‎

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Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., et al. 2014. “The Reactome pathway knowledgebase.” Journal Article. <em>Nucleic Acids Res</em> 42 (database issue): D472–D477. <a href="https://doi.org/10.1093/nar/gkt1102">https://doi.org/10.1093/nar/gkt1102</a>.
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Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="http://igraph.org">http://igraph.org</a>.
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Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="https://igraph.org/">https://igraph.org/</a>.
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‎vignettes/simulate_expression.Rmd‎

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<p>Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., et al. 2014. “The Reactome pathway knowledgebase.” Journal Article. <em>Nucleic Acids Res</em> 42 (database issue): D472–D477. <a href="https://doi.org/10.1093/nar/gkt1102">https://doi.org/10.1093/nar/gkt1102</a>.</p>
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<p>Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="http://igraph.org">http://igraph.org</a>.</p>
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<p>Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="https://igraph.org/">https://igraph.org/</a>.</p>
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<p>Dijkstra, E.W., 1959. “A note on two problems in connexion with graphs.” <em>Numerische mathematik</em> 1 (1): 269–271.</p>
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‎vignettes/simulate_expression.html‎

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Croft, D., Mundo, A.F., Haw, R., Milacic, M., Weiser, J., Wu, G., Caudy, M., et al. 2014. “The Reactome pathway knowledgebase.” Journal Article. <em>Nucleic Acids Res</em> 42 (database issue): D472–D477. <a href="https://doi.org/10.1093/nar/gkt1102">https://doi.org/10.1093/nar/gkt1102</a>.
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Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="http://igraph.org">http://igraph.org</a>.
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Csardi, G., and Nepusz, T. 2006. “The Igraph Software Package for Complex Network Research.” <em>InterJournal</em> Complex Systems: 1695. <a href="https://igraph.org/">https://igraph.org/</a>.
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Dijkstra, E.W., 1959. “A note on two problems in connexion with graphs.” <em>Numerische mathematik</em> 1 (1): 269–271.

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