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ci: remove test with Snakemake v8 (#44)
* ci: remove test with Snakemake v8 * ci: update Snakemake v9 minor for tests * ci: update Snakemake v9 for apptainer test * docs: update Snakemake versions on README
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‎.github/workflows/test_v8.yml‎

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‎.test/environment_apptainer.yaml‎

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- defaults
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dependencies:
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- python==3.11.6
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- snakemake==9.1.6
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- snakemake==9.15.0
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- apptainer==1.4.1

‎.test/environment_v8.yaml‎

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‎.test/environment_v9.yaml‎

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- defaults
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dependencies:
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- python==3.11.6
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- snakemake==9.1.6
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- snakemake==9.15.0

‎README.md‎

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![Install workflow](https://github.com/PathoGenOmics-Lab/VIPERA/actions/workflows/install.yml/badge.svg)
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![Test workflow with Snakemake v7](https://github.com/PathoGenOmics-Lab/VIPERA/actions/workflows/test_v7.yml/badge.svg)
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![Test workflow with Snakemake v8](https://github.com/PathoGenOmics-Lab/VIPERA/actions/workflows/test_v8.yml/badge.svg)
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![Test workflow with Snakemake v9](https://github.com/PathoGenOmics-Lab/VIPERA/actions/workflows/test_v9.yml/badge.svg)
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![Test workflow with Snakemake v9 and Apptainer](https://github.com/PathoGenOmics-Lab/VIPERA/actions/workflows/test_apptainer.yml/badge.svg)
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We use continuous integration (CI) to automatically verify that all dependencies install correctly
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with Snakemake v7.32.4 (see GitHub Action `Install`), and to test that VIPERA runs
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successfully with Snakemake v7.32.4, v8.30.0, and v9.1.6 using conda (Actions `Test Sm v[7-9]`).
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We also test a containerized workflow with Snakemake v9.1.6 and Apptainer using a
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successfully with Snakemake v7.32.4 and v9.15.0 using conda (Actions `Test Sm v(7|9)`).
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We also test a containerized workflow with Snakemake v9.15.0 and Apptainer using a
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[remote image](https://hub.docker.com/r/ahmig/vipera) (Action `Test Sm v9 Apptainer`).
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This image is automatically updated in every version (Action `Deploy`).
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