Merge pull request #18 from OnnoKampman/add-extracted-features #73

	name: Pytest

	# Run Pytest only on pushes to main branch and to pull requests into main branch.
	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.11"]
	steps:
	- name: Checkout repository
	uses: actions/checkout@v3
	# - name: Switch to Current Branch
	# run: git checkout ${{ env.BRANCH }}
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install R
	run: \|
	sudo apt-get update
	sudo apt-get install -y r-base r-base-dev
	- name: Install Python and R dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r tests_requirements.txt
	sudo apt-get install libmpfr-dev libmpfr-doc
	sudo Rscript -e 'install.packages("rmgarch", repos="https://cloud.r-project.org")'
	# pip install -e .
	# Coverage report is both printed to the console and saved as an XML file.
	- name: Run unit tests
	run: \|
	python -m pytest --cov=./fcest --cov-report=term --cov-report=xml --import-mode=append ./tests
	echo "$(python -m pytest --cov=./fcest --cov-report=xml \| grep -oP '(?<=<report\s+.*\s+line-rate=")\d+(\.\d+)?')"
	# echo "$(pytest --cov=./fcest --cov-report=xml \| grep -oP '(?<=<report\s+.*\s+line-rate=")\d+(\.\d+)?')" > coverage_percentage.txt

	# - name: Set Coverage Percentage
	# id: set_coverage
	# run: echo "::set-output name=coverage::$(pytest --cov=./fcest --cov-report=xml \| grep -oP '(?<=<report\s+.*\s+line-rate=")\d+(\.\d+)?')"

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