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Reorganize parameters classes #58

@MikeHeiber

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@MikeHeiber

Parameters_Simulation and Parameters_Lattice could be reorganized a separate Parameters classes nested within the Simulation and Lattice classes respectively. Also, since the Simulation class contains a Lattice member variable, Simulation::Parameters could inherit from Lattice::Parameters to create a single derived class with all of the required parameters.

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    enhancementPrimarily code enhancements or other minor improvements that do not affect the main functionality.

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