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Container Smoke Test

feat: v0.5.0 — Nextflow DSL2 post-calling pipeline (27 modules) #55

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feat: v0.5.0 — Nextflow DSL2 post-calling pipeline (27 modules)

feat: v0.5.0 — Nextflow DSL2 post-calling pipeline (27 modules) #55

Run time

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Job Run time
versions-env-sync
5s
pull-and-verify (staphb/bcftools:1.21, bcftools --version)
8s
pull-and-verify (broadinstitute/picard:3.4.0, java -version)
11s
pull-and-verify (quay.io/biocontainers/minimap2:2.28--he4a0461_0, minimap2 --version)
6s
pull-and-verify (quay.io/biocontainers/vcfanno:0.3.7--he881be0_0, bash -c 'vcfanno 2>&1 | grep -q...
6s
pull-and-verify (brentp/duphold:v0.2.3, duphold --version)
21s
pull-and-verify (quay.io/biocontainers/pypgx:0.26.0--pyh7e72e81_0, pypgx --version)
33s
pull-and-verify (getwilds/annotsv:3.4.4, AnnotSV --version)
47s
pull-and-verify (python:3.11, python3 --version)
20s
pull-and-verify (pgkb/pharmcat:3.2.0, pharmcat_pipeline --version)
54s
3m 31s