mgnifams/modules.json at main · EBI-Metagenomics/mgnifams · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
{
  "name": "ebi-metagenomics/mgnifams",
  "homePage": "https://github.com/ebi-metagenomics/mgnifams",
  "repos": {
    "https://github.com/nf-core/modules.git": {
      "modules": {
        "nf-core": {
          "aria2": {
            "branch": "master",
            "git_sha": "48c86d92fe761cb3faafdb38e4d8ca3bf6d1c657",
            "installed_by": ["modules"]
          },
          "find/concatenate": {
            "branch": "master",
            "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
            "installed_by": ["modules"]
          },
          "foldseek/easysearch": {
            "branch": "master",
            "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
            "installed_by": ["modules"]
          },
          "hhsuite/hhblits": {
            "branch": "master",
            "git_sha": "ec969dbd5a778b5b2c1204f14d5622edc064b805",
            "installed_by": ["modules"]
          },
          "hhsuite/hhsearch": {
            "branch": "master",
            "git_sha": "b3c8ac6683cbb871ec8ab4bd83a9bb7974681d85",
            "installed_by": ["modules"]
          },
          "hhsuite/reformat": {
            "branch": "master",
            "git_sha": "42a304570b75122f9948dde6c34182e4d6bb22b3",
            "installed_by": ["modules"]
          },
          "hmmer/hmmsearch": {
            "branch": "master",
            "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
            "installed_by": ["modules"]
          },
          "mmseqs/createdb": {
            "branch": "master",
            "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
            "installed_by": ["modules"]
          },
          "mmseqs/createtsv": {
            "branch": "master",
            "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
            "installed_by": ["modules"],
            "patch": "modules/nf-core/mmseqs/createtsv/mmseqs-createtsv.diff"
          },
          "mmseqs/linclust": {
            "branch": "master",
            "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
            "installed_by": ["modules"]
          },
          "multiqc": {
            "branch": "master",
            "git_sha": "e594e9dfaffa7572afc11bafc634984fd4cbd87b",
            "installed_by": ["modules"]
          },
          "pigz/uncompress": {
            "branch": "master",
            "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
            "installed_by": ["modules"]
          },
          "s4pred/runmodel": {
            "branch": "master",
            "git_sha": "712d3f4d6c1b430c6a3eab7c1f92c8df63ad9a35",
            "installed_by": ["modules"],
            "patch": "modules/nf-core/s4pred/runmodel/s4pred-runmodel.diff"
          },
          "seqkit/stats": {
            "branch": "master",
            "git_sha": "9fe7867a4f012db581d7bd560228ded1074eb0e5",
            "installed_by": ["modules"]
          }
        }
      },
      "subworkflows": {
        "nf-core": {
          "utils_nextflow_pipeline": {
            "branch": "master",
            "git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
            "installed_by": ["subworkflows"]
          },
          "utils_nfcore_pipeline": {
            "branch": "master",
            "git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
            "installed_by": ["subworkflows"]
          },
          "utils_nfschema_plugin": {
            "branch": "master",
            "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
            "installed_by": ["subworkflows"]
          }
        }
      }
    }
  }
}